Click here to switch to the map view.

The map label for this gene is ymfC [C]

Identifier: 86605480

GI number: 86605480

Start: 780166

End: 780984

Strand: Reverse

Name: ymfC [C]

Synonym: CYA_0773

Alternate gene names: 86605480

Gene position: 780984-780166 (Counterclockwise)

Preceding gene: 86605481

Following gene: 86605479

Centisome position: 26.63

GC content: 61.66

Gene sequence:

>819_bases
ATGGCGACACCCCAACGGCTCCAGAAGCTCTTGGCTCAACAGGGGCTGGCCTCCCGTCGCCAGGTGGAAGCCTGGATCCT
GGCCGGGCGCATTCGGGTGAACGGGAAGGTGGTCACCGAGCTGGGCTTTAAAGCCGATCCCGAACGGGATCGCGTCGAGG
TGGATGGACGGGTGATCCCTTTCGGGGATCCAGCCCGCTACGTTTTGCTCCTGCACAAGCCCCTGGGGGTTTTGTCAACC
TGCAAGGATCCGTGGGGGCGCAAGACGGTGCTGGATCTGCTTCCCCCGCCCTGGAACCGGCAGATCCGCCTTTATCCCGT
GGGCCGACTGGATGCAGACAGCAGTGGGGCGCTGCTGCTCACCAACGATGGCGACCTGACGCTGAAGCTGACCCATCCGC
GCTATCATCTGCCCAAAATCTATCGGGTGCAGGTACAGGGGCGTCCGAGCCGGGCTACCCTGCAACAGTGGCGAGACGGA
GTAAACTTAGAGGGGTACACTACTCTGCCGGCAGAGGTGGAGTTCTGCCCTGCTCCCAACTTTGGGTATAGGCAGGATGC
CAATTCCTCGTGGCTGAGGGTGGTTTTGTTTGAGGGGCGCAACCGGCAAATTCGGCGCGTAGCGGAGCAGCTGGGGCATC
CGGTGCTCAGGCTGCATCGGGAAGCAATCGGCCCGCTGCACCTCGGAAACCTAAAGGCAGGTCAGTTCCGCCTATTGGAG
CCCCAAGAGGTTCAGGCTCTGCTAGCCCCTCTTGCCGGTACCGACAGCTTGGCTCTGTTCAGAAGCGCCTCTTTGCACTC
TTTCCGTCCCTCTTCATAA

Upstream 100 bases:

>100_bases
CCAGTCCTGCGGAACTGCCGGATCTGCTCTCGAAATCCGAAGACTCTGCTGCCTAGCAGCCCCGTTCTCCGATCGCTGTT
TCTCTTGTGACCCCATGCCT

Downstream 100 bases:

>100_bases
TTAGCTGTGGGAACTGTGCGCACAATCTCACACTAGCCTCCTCTCTTCCGCAGGTAGCCGAACGATGCAAGAGTCGGAAC
GCTCTAAGGACTCGGTCCCG

Product: RNA pseudouridine synthase family protein

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MATPQRLQKLLAQQGLASRRQVEAWILAGRIRVNGKVVTELGFKADPERDRVEVDGRVIPFGDPARYVLLLHKPLGVLST
CKDPWGRKTVLDLLPPPWNRQIRLYPVGRLDADSSGALLLTNDGDLTLKLTHPRYHLPKIYRVQVQGRPSRATLQQWRDG
VNLEGYTTLPAEVEFCPAPNFGYRQDANSSWLRVVLFEGRNRQIRRVAEQLGHPVLRLHREAIGPLHLGNLKAGQFRLLE
PQEVQALLAPLAGTDSLALFRSASLHSFRPSS

Sequences:

>Translated_272_residues
MATPQRLQKLLAQQGLASRRQVEAWILAGRIRVNGKVVTELGFKADPERDRVEVDGRVIPFGDPARYVLLLHKPLGVLST
CKDPWGRKTVLDLLPPPWNRQIRLYPVGRLDADSSGALLLTNDGDLTLKLTHPRYHLPKIYRVQVQGRPSRATLQQWRDG
VNLEGYTTLPAEVEFCPAPNFGYRQDANSSWLRVVLFEGRNRQIRRVAEQLGHPVLRLHREAIGPLHLGNLKAGQFRLLE
PQEVQALLAPLAGTDSLALFRSASLHSFRPSS
>Mature_271_residues
ATPQRLQKLLAQQGLASRRQVEAWILAGRIRVNGKVVTELGFKADPERDRVEVDGRVIPFGDPARYVLLLHKPLGVLSTC
KDPWGRKTVLDLLPPPWNRQIRLYPVGRLDADSSGALLLTNDGDLTLKLTHPRYHLPKIYRVQVQGRPSRATLQQWRDGV
NLEGYTTLPAEVEFCPAPNFGYRQDANSSWLRVVLFEGRNRQIRRVAEQLGHPVLRLHREAIGPLHLGNLKAGQFRLLEP
QEVQALLAPLAGTDSLALFRSASLHSFRPSS

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081838, Length=186, Percent_Identity=41.3978494623656, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787524, Length=235, Percent_Identity=38.2978723404255, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1788510, Length=248, Percent_Identity=33.4677419354839, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790453, Length=252, Percent_Identity=32.1428571428571, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30597; Mature: 30466

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPQRLQKLLAQQGLASRRQVEAWILAGRIRVNGKVVTELGFKADPERDRVEVDGRVIP
CCCHHHHHHHHHHCCCHHHHHEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEECCEEEE
FGDPARYVLLLHKPLGVLSTCKDPWGRKTVLDLLPPPWNRQIRLYPVGRLDADSSGALLL
CCCCCEEEEEEECCCCHHHHCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCEEEE
TNDGDLTLKLTHPRYHLPKIYRVQVQGRPSRATLQQWRDGVNLEGYTTLPAEVEFCPAPN
ECCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCEEECCCCC
FGYRQDANSSWLRVVLFEGRNRQIRRVAEQLGHPVLRLHREAIGPLHLGNLKAGQFRLLE
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCCCEEECC
PQEVQALLAPLAGTDSLALFRSASLHSFRPSS
HHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ATPQRLQKLLAQQGLASRRQVEAWILAGRIRVNGKVVTELGFKADPERDRVEVDGRVIP
CCHHHHHHHHHHCCCHHHHHEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEECCEEEE
FGDPARYVLLLHKPLGVLSTCKDPWGRKTVLDLLPPPWNRQIRLYPVGRLDADSSGALLL
CCCCCEEEEEEECCCCHHHHCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCEEEE
TNDGDLTLKLTHPRYHLPKIYRVQVQGRPSRATLQQWRDGVNLEGYTTLPAEVEFCPAPN
ECCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCEEECCCCC
FGYRQDANSSWLRVVLFEGRNRQIRRVAEQLGHPVLRLHREAIGPLHLGNLKAGQFRLLE
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCCCEEECC
PQEVQALLAPLAGTDSLALFRSASLHSFRPSS
HHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]