| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605479
Identifier: 86605479
GI number: 86605479
Start: 779226
End: 780056
Strand: Reverse
Name: 86605479
Synonym: CYA_0772
Alternate gene names: NA
Gene position: 780056-779226 (Counterclockwise)
Preceding gene: 86605480
Following gene: 86605475
Centisome position: 26.6
GC content: 61.01
Gene sequence:
>831_bases TTGGAAGCCCTGGGATCCCTGTTGCGGCAAACACGAGAGGCACGGGGGCTGACGTTGACAGATGTAGCCAACGATACATT CATCCGCTCCCAATATCTGCAGGCCCTGGAGGAAGCAGACTTGAGTCGGCTGCCGGAGCCGGTTTACGTGCAAGGCTTCA TTAAGCGCTATGCCAACTATCTGGGGCTGGATGGCGAGGCTTTATCTCGGCAAGCTTTGCCACTCCTATCTGCCAAAACG CCCCATGCGCTCCCTCCTCTTACTGCTGTTGGCGAACAGCCGGCCTTTGCCCTGCGCCCCTTTCACCTTTGGGCCGCCTA TGTGGTGCTGGTCGTGCTGGCGGTGGGAGGGCTGTCGGCTCTTTTGGACGGCACGGGCAACCCCTTTGGGCATTGGCTGG CCAGCCTACAAAGCGGCGAGGGATCCCAGTCGCAGCCGCGAGCAGCTGACTCCCCTGGGCGCAGCCCAGAACCGACCCTT CGCCAGATGTTTCCCACACTGGATCAGTGGACGCGCATCCAGGGGGTTTTCCCCGACGTGTTGGAGGCCCCGCCGCGCAA GCCGGTGCGCCTTGATATTCGCGTGGTAGAGCGTCCCTCCTGGCTACGAGTCATTGCCGATGGACAAACCGTTTTTGAGG CCACCCTGCAGCCGGGGGCGGAGCTGAACTGGGAAGCCGAGCGATCGATTGTGCTGCGCGCCGGCAATGCCGGCGGGGTG TTGGTGACCTTCAACGACCGCGATCTGGGAGTGATGGGAAGGTTTGGAGAGGTGAAAGAGCTGATGTTTGAGCCGGGGCT AGACATTCAATCCTTCCAATCCTTGCAATAG
Upstream 100 bases:
>100_bases GGAACTGTGCGCACAATCTCACACTAGCCTCCTCTCTTCCGCAGGTAGCCGAACGATGCAAGAGTCGGAACGCTCTAAGG ACTCGGTCCCGCTAACGCGA
Downstream 100 bases:
>100_bases GGATCCGGCTCGGACGGAGGGGCTAAAGGCCTTGATTGGGTTGAGGTAGGGCAGAAGCGATTTGCCACCCTTGGGATTCC AACTGCTGCAGCAGACGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MEALGSLLRQTREARGLTLTDVANDTFIRSQYLQALEEADLSRLPEPVYVQGFIKRYANYLGLDGEALSRQALPLLSAKT PHALPPLTAVGEQPAFALRPFHLWAAYVVLVVLAVGGLSALLDGTGNPFGHWLASLQSGEGSQSQPRAADSPGRSPEPTL RQMFPTLDQWTRIQGVFPDVLEAPPRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNWEAERSIVLRAGNAGGV LVTFNDRDLGVMGRFGEVKELMFEPGLDIQSFQSLQ
Sequences:
>Translated_276_residues MEALGSLLRQTREARGLTLTDVANDTFIRSQYLQALEEADLSRLPEPVYVQGFIKRYANYLGLDGEALSRQALPLLSAKT PHALPPLTAVGEQPAFALRPFHLWAAYVVLVVLAVGGLSALLDGTGNPFGHWLASLQSGEGSQSQPRAADSPGRSPEPTL RQMFPTLDQWTRIQGVFPDVLEAPPRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNWEAERSIVLRAGNAGGV LVTFNDRDLGVMGRFGEVKELMFEPGLDIQSFQSLQ >Mature_276_residues MEALGSLLRQTREARGLTLTDVANDTFIRSQYLQALEEADLSRLPEPVYVQGFIKRYANYLGLDGEALSRQALPLLSAKT PHALPPLTAVGEQPAFALRPFHLWAAYVVLVVLAVGGLSALLDGTGNPFGHWLASLQSGEGSQSQPRAADSPGRSPEPTL RQMFPTLDQWTRIQGVFPDVLEAPPRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNWEAERSIVLRAGNAGGV LVTFNDRDLGVMGRFGEVKELMFEPGLDIQSFQSLQ
Specific function: Unknown
COG id: COG1426
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30266; Mature: 30266
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEALGSLLRQTREARGLTLTDVANDTFIRSQYLQALEEADLSRLPEPVYVQGFIKRYANY CHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LGLDGEALSRQALPLLSAKTPHALPPLTAVGEQPAFALRPFHLWAAYVVLVVLAVGGLSA CCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LLDGTGNPFGHWLASLQSGEGSQSQPRAADSPGRSPEPTLRQMFPTLDQWTRIQGVFPDV HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCHHH LEAPPRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNWEAERSIVLRAGNAGGV HCCCCCCCEEEEEEEECCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCE LVTFNDRDLGVMGRFGEVKELMFEPGLDIQSFQSLQ EEEECCCCCCHHCCHHHHHHHHHCCCCCHHHHCCCC >Mature Secondary Structure MEALGSLLRQTREARGLTLTDVANDTFIRSQYLQALEEADLSRLPEPVYVQGFIKRYANY CHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LGLDGEALSRQALPLLSAKTPHALPPLTAVGEQPAFALRPFHLWAAYVVLVVLAVGGLSA CCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LLDGTGNPFGHWLASLQSGEGSQSQPRAADSPGRSPEPTLRQMFPTLDQWTRIQGVFPDV HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCHHH LEAPPRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNWEAERSIVLRAGNAGGV HCCCCCCCEEEEEEEECCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCE LVTFNDRDLGVMGRFGEVKELMFEPGLDIQSFQSLQ EEEECCCCCCHHCCHHHHHHHHHCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA