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The map label for this gene is ydcP [H]

Identifier: 86605472

GI number: 86605472

Start: 771959

End: 774466

Strand: Reverse

Name: ydcP [H]

Synonym: CYA_0765

Alternate gene names: 86605472

Gene position: 774466-771959 (Counterclockwise)

Preceding gene: 86605473

Following gene: 86605471

Centisome position: 26.41

GC content: 62.84

Gene sequence:

>2508_bases
ATGAGCGCTTCGATAAGTTCCCTCAAAACCGAACGTCTGGCGGCGGCCTTGCCCGCCGAGCTGCCGCTGCTGCTTGCGCC
AGCGGGGGATTGGGAGTGTGCAAAGGCGGCGGTGGAAAACGGAGCCGATGCCATCTATTTCGGGCTGGAACGGTTCAACG
CTCGCCTGCGCGCCCGCAACTTCACCGAAGCGGATTTGCCGGAGCTGATGGCCTGGCTGCACCGGCGCGGGGTGCGGGGC
TACGTAACTTTAAATACCTTGGTCTTTCCCGAGGAGCTGGAGGAGGCGGAACGGTACATCCGCGCGATGACAGCAGCGGG
AGTAGACGCGGTCATTGTGCAGGATGTCGGCATTGCCCGCCTGGTTCGGCATCTTTCTCCCGATTTCCCCATCCACGCCT
CGACGCAGATGACTGTCACCAGCGGCGTGGGAGCTGAGTTTGCCGCCGAGCTGGGCTGCGAGGTGGTGGTGCTGGCGCGG
GAGTGTTCCCTCAAGGAAATAGCCAAGATCCGCGCCCATCTGGAAGAGAGGGGATCCCCAATTGCTCTGGAGGTGTTTGT
CCATGGGGCCCTCTGCGTGGCCTACTCCGGGCAATGTCTGACCAGCGAAGCCCTGGGAGGACGCTCGGCCAACCGTGGAG
AATGCGCCCAGGCCTGTCGCCTGCCCTATGAGCTGGTGGTGGACGGGATCCGGCGCGACTTGGGCGAGAAGCGGTATTTG
CTCAGCCCCCAGGATCTGGCCGGGCTGGAGGTGCTGCCGGAGCTGGTCAAGCTGGGGATCCACTGTTTGAAAATTGAAGG
CCGCCTGAAATCGCCGGAATATGTAGCTAATGTAACGCGCATCTATCGGCGGGCCTTGGACGCTCTGGGGGCAGGGCAGG
CGTGGCAGCCCTCAGCCCAGGAATGGTATGAGCTGGAGATGAGCTTTTCCCGCGGCCTGTACACCGGCTGGCTGCGAGGC
ATCAACAACCAAAAGCTGGTGCATGCCCGTTTTGGCAAAAAGCGCGGCGTTTACCTAGGGCAGGTGGTGAGGATCGAGGG
GGATCAGGTGGGAGTGCGCCTGGAAGCTCCCCTCAAGGCGGGGGATGGCGTGGTGTTTGACCAGGGGGAGCCAGAGCTGC
CGGAGCAGGGGGGACGAGTTTACCGCGTGCACCAGAAGCAGGGGTTGGCCTGGCTGAGCTTTGCCCAGGGGGCAATTGAC
CTCAAACGCCTGCGGGTAGGGGATCGCCTCTGGAAAACCAGCGACCCAGAGCTGGAAAAGCGCCTGCGCCAGAGCTATGC
CGGGGATCAGCCTCGCTTTCAACGCCCCGTCCACCTGGAAGTCCATGGCCAGGCCGGACTGCCCCTGACCCTGATCCTAC
GGGACGAAGAGGGCCACGTGGTGCAGGTGGATTCCCCACTGCCTTTGCAACCCGCTCGCCAGCAGCCCCTCACCGACGAG
AAGCTGCGGCAGCAACTGGGCCGCCTAGGGGGCACGCCCTTCCGGCTGGGATCCCTGCACAACGCCCTGGAGGGGGAGGT
GATGCTGCCGGTCAGCGTCCTCAACCAGATGCGGCGCCAGGCAGTGGAGCAGTTGCAAGCGCTGCGAGCCCGGCCCCGCC
GCTGGCAGCTCAATCCTGACGCCCACTGGCAAGACCTGCTGCCTCCCCTGGAGCCAGCCGAGCCGGGATTGCCCCAGCTG
GTGGTGTTGGTGCGGGAGCCAGCCCAGTTGTCGGCGGCAATTGCCTGTGGCATCCGGCAGATCTACCTGGAGTTTGAGGA
TCCCCGCCGCTACCGGGAAGTTATCCGCGCTACCAAAGCTTCTCACCCCGAGGTGGAGCTGTGGGCGGCCCCGCCCCGCA
TCACTAAGCCGGGGGAAACTTGGATTCTAAAACAGGTGCTGGCGGCAGGAGCCGATGGCTATCTGGTGCGAAACTACGAC
CACCTACGCTTTTTCGCCAACCAGCGCTGCATCGGCGATTTTTCCTTGAACGTGGCCAATCCCCTCGCCGCCCATTACTT
GAAAACCCGCTACCGCCTGGAGCGCCTGACCGCCTCCTATGACCTCAACCACGAGCAACTGGGATCCCTGCTGCAGGCCG
GCCCCGCCCACTGGTACGAGGTTACCATCCACCAGCACATGCCCATGTTCCACATGGAGCACTGCGTCTTCTGCGCCTTT
TTGTCCAGTGGCACGGATTACACCAACTGTGGCCGCCCCTGCGAAAAGCACGAGGTGAGGCTGAGGGACAGGGCCAATGT
GGAGCACATTTTGAAAGCCGATGCCGGCTGCCGCAACACCCTCTACAATGGCAAAGCCCAAACTGGGGCAGAATATGTGT
CGCAGCTCCTGGCGCTGGGGTTGCGATATCTGCGCATTGAGTTCTTGCAGGAGTCTGCCGAGCAGGTTCAGCAAACCCTA
CGCTGCTATCAACAGCTCCTCCAGGGCCAGATGAGTGGCTCTCAACTGTGGCGGGAGCTAAAGCTGTACAGCCAGTTGGG
GGTAACAAGGGGCTCTCTGGAAAGTTGA

Upstream 100 bases:

>100_bases
GCCGGCAGTAGGGCTTGGCCTGAGGCAAGGGGGATCCTGCTCTCAGGTTTTTTGCTTTTGAATGGGAGAGGATCCCTTGT
TTTTTCTCAGGGTTCTTCTC

Downstream 100 bases:

>100_bases
GGTCGATCTATGCCCTTTTGGCCGCCGCAGATCCTCCCCTCTGCCCTCTACCCCCTTCTGCAGCAGGGCCTCAAGACCCT
TTTTCCTGAGGCTCTCTGGG

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 835; Mature: 834

Protein sequence:

>835_residues
MSASISSLKTERLAAALPAELPLLLAPAGDWECAKAAVENGADAIYFGLERFNARLRARNFTEADLPELMAWLHRRGVRG
YVTLNTLVFPEELEEAERYIRAMTAAGVDAVIVQDVGIARLVRHLSPDFPIHASTQMTVTSGVGAEFAAELGCEVVVLAR
ECSLKEIAKIRAHLEERGSPIALEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRLPYELVVDGIRRDLGEKRYL
LSPQDLAGLEVLPELVKLGIHCLKIEGRLKSPEYVANVTRIYRRALDALGAGQAWQPSAQEWYELEMSFSRGLYTGWLRG
INNQKLVHARFGKKRGVYLGQVVRIEGDQVGVRLEAPLKAGDGVVFDQGEPELPEQGGRVYRVHQKQGLAWLSFAQGAID
LKRLRVGDRLWKTSDPELEKRLRQSYAGDQPRFQRPVHLEVHGQAGLPLTLILRDEEGHVVQVDSPLPLQPARQQPLTDE
KLRQQLGRLGGTPFRLGSLHNALEGEVMLPVSVLNQMRRQAVEQLQALRARPRRWQLNPDAHWQDLLPPLEPAEPGLPQL
VVLVREPAQLSAAIACGIRQIYLEFEDPRRYREVIRATKASHPEVELWAAPPRITKPGETWILKQVLAAGADGYLVRNYD
HLRFFANQRCIGDFSLNVANPLAAHYLKTRYRLERLTASYDLNHEQLGSLLQAGPAHWYEVTIHQHMPMFHMEHCVFCAF
LSSGTDYTNCGRPCEKHEVRLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVSQLLALGLRYLRIEFLQESAEQVQQTL
RCYQQLLQGQMSGSQLWRELKLYSQLGVTRGSLES

Sequences:

>Translated_835_residues
MSASISSLKTERLAAALPAELPLLLAPAGDWECAKAAVENGADAIYFGLERFNARLRARNFTEADLPELMAWLHRRGVRG
YVTLNTLVFPEELEEAERYIRAMTAAGVDAVIVQDVGIARLVRHLSPDFPIHASTQMTVTSGVGAEFAAELGCEVVVLAR
ECSLKEIAKIRAHLEERGSPIALEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRLPYELVVDGIRRDLGEKRYL
LSPQDLAGLEVLPELVKLGIHCLKIEGRLKSPEYVANVTRIYRRALDALGAGQAWQPSAQEWYELEMSFSRGLYTGWLRG
INNQKLVHARFGKKRGVYLGQVVRIEGDQVGVRLEAPLKAGDGVVFDQGEPELPEQGGRVYRVHQKQGLAWLSFAQGAID
LKRLRVGDRLWKTSDPELEKRLRQSYAGDQPRFQRPVHLEVHGQAGLPLTLILRDEEGHVVQVDSPLPLQPARQQPLTDE
KLRQQLGRLGGTPFRLGSLHNALEGEVMLPVSVLNQMRRQAVEQLQALRARPRRWQLNPDAHWQDLLPPLEPAEPGLPQL
VVLVREPAQLSAAIACGIRQIYLEFEDPRRYREVIRATKASHPEVELWAAPPRITKPGETWILKQVLAAGADGYLVRNYD
HLRFFANQRCIGDFSLNVANPLAAHYLKTRYRLERLTASYDLNHEQLGSLLQAGPAHWYEVTIHQHMPMFHMEHCVFCAF
LSSGTDYTNCGRPCEKHEVRLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVSQLLALGLRYLRIEFLQESAEQVQQTL
RCYQQLLQGQMSGSQLWRELKLYSQLGVTRGSLES
>Mature_834_residues
SASISSLKTERLAAALPAELPLLLAPAGDWECAKAAVENGADAIYFGLERFNARLRARNFTEADLPELMAWLHRRGVRGY
VTLNTLVFPEELEEAERYIRAMTAAGVDAVIVQDVGIARLVRHLSPDFPIHASTQMTVTSGVGAEFAAELGCEVVVLARE
CSLKEIAKIRAHLEERGSPIALEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRLPYELVVDGIRRDLGEKRYLL
SPQDLAGLEVLPELVKLGIHCLKIEGRLKSPEYVANVTRIYRRALDALGAGQAWQPSAQEWYELEMSFSRGLYTGWLRGI
NNQKLVHARFGKKRGVYLGQVVRIEGDQVGVRLEAPLKAGDGVVFDQGEPELPEQGGRVYRVHQKQGLAWLSFAQGAIDL
KRLRVGDRLWKTSDPELEKRLRQSYAGDQPRFQRPVHLEVHGQAGLPLTLILRDEEGHVVQVDSPLPLQPARQQPLTDEK
LRQQLGRLGGTPFRLGSLHNALEGEVMLPVSVLNQMRRQAVEQLQALRARPRRWQLNPDAHWQDLLPPLEPAEPGLPQLV
VLVREPAQLSAAIACGIRQIYLEFEDPRRYREVIRATKASHPEVELWAAPPRITKPGETWILKQVLAAGADGYLVRNYDH
LRFFANQRCIGDFSLNVANPLAAHYLKTRYRLERLTASYDLNHEQLGSLLQAGPAHWYEVTIHQHMPMFHMEHCVFCAFL
SSGTDYTNCGRPCEKHEVRLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVSQLLALGLRYLRIEFLQESAEQVQQTLR
CYQQLLQGQMSGSQLWRELKLYSQLGVTRGSLES

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=516, Percent_Identity=34.1085271317829, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1788397, Length=393, Percent_Identity=30.2798982188295, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1789548, Length=325, Percent_Identity=31.6923076923077, Blast_Score=139, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 93588; Mature: 93456

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASISSLKTERLAAALPAELPLLLAPAGDWECAKAAVENGADAIYFGLERFNARLRARN
CCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCC
FTEADLPELMAWLHRRGVRGYVTLNTLVFPEELEEAERYIRAMTAAGVDAVIVQDVGIAR
CCCCCHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEHHHCCHHH
LVRHLSPDFPIHASTQMTVTSGVGAEFAAELGCEVVVLARECSLKEIAKIRAHLEERGSP
HHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
IALEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRLPYELVVDGIRRDLGEKRYL
EEEEEEEHHHEEEEECCCEEEHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCEE
LSPQDLAGLEVLPELVKLGIHCLKIEGRLKSPEYVANVTRIYRRALDALGAGQAWQPSAQ
CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
EWYELEMSFSRGLYTGWLRGINNQKLVHARFGKKRGVYLGQVVRIEGDQVGVRLEAPLKA
HHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEECCEEEEEEECCCCC
GDGVVFDQGEPELPEQGGRVYRVHQKQGLAWLSFAQGAIDLKRLRVGDRLWKTSDPELEK
CCCEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
RLRQSYAGDQPRFQRPVHLEVHGQAGLPLTLILRDEEGHVVQVDSPLPLQPARQQPLTDE
HHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCHH
KLRQQLGRLGGTPFRLGSLHNALEGEVMLPVSVLNQMRRQAVEQLQALRARPRRWQLNPD
HHHHHHHHCCCCCEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AHWQDLLPPLEPAEPGLPQLVVLVREPAQLSAAIACGIRQIYLEFEDPRRYREVIRATKA
CCHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCC
SHPEVELWAAPPRITKPGETWILKQVLAAGADGYLVRNYDHLRFFANQRCIGDFSLNVAN
CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCEECCEECCCCC
PLAAHYLKTRYRLERLTASYDLNHEQLGSLLQAGPAHWYEVTIHQHMPMFHMEHCVFCAF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEHHCCCHHHHHHHHHHHH
LSSGTDYTNCGRPCEKHEVRLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVSQLLALG
HHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHH
LRYLRIEFLQESAEQVQQTLRCYQQLLQGQMSGSQLWRELKLYSQLGVTRGSLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SASISSLKTERLAAALPAELPLLLAPAGDWECAKAAVENGADAIYFGLERFNARLRARN
CCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCC
FTEADLPELMAWLHRRGVRGYVTLNTLVFPEELEEAERYIRAMTAAGVDAVIVQDVGIAR
CCCCCHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEHHHCCHHH
LVRHLSPDFPIHASTQMTVTSGVGAEFAAELGCEVVVLARECSLKEIAKIRAHLEERGSP
HHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
IALEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRLPYELVVDGIRRDLGEKRYL
EEEEEEEHHHEEEEECCCEEEHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCEE
LSPQDLAGLEVLPELVKLGIHCLKIEGRLKSPEYVANVTRIYRRALDALGAGQAWQPSAQ
CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
EWYELEMSFSRGLYTGWLRGINNQKLVHARFGKKRGVYLGQVVRIEGDQVGVRLEAPLKA
HHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEECCEEEEEEECCCCC
GDGVVFDQGEPELPEQGGRVYRVHQKQGLAWLSFAQGAIDLKRLRVGDRLWKTSDPELEK
CCCEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
RLRQSYAGDQPRFQRPVHLEVHGQAGLPLTLILRDEEGHVVQVDSPLPLQPARQQPLTDE
HHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCHH
KLRQQLGRLGGTPFRLGSLHNALEGEVMLPVSVLNQMRRQAVEQLQALRARPRRWQLNPD
HHHHHHHHCCCCCEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AHWQDLLPPLEPAEPGLPQLVVLVREPAQLSAAIACGIRQIYLEFEDPRRYREVIRATKA
CCHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCC
SHPEVELWAAPPRITKPGETWILKQVLAAGADGYLVRNYDHLRFFANQRCIGDFSLNVAN
CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCEECCEECCCCC
PLAAHYLKTRYRLERLTASYDLNHEQLGSLLQAGPAHWYEVTIHQHMPMFHMEHCVFCAF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEHHCCCHHHHHHHHHHHH
LSSGTDYTNCGRPCEKHEVRLRDRANVEHILKADAGCRNTLYNGKAQTGAEYVSQLLALG
HHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHH
LRYLRIEFLQESAEQVQQTLRCYQQLLQGQMSGSQLWRELKLYSQLGVTRGSLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]