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The map label for this gene is yxkH [H]

Identifier: 86605222

GI number: 86605222

Start: 521665

End: 523812

Strand: Reverse

Name: yxkH [H]

Synonym: CYA_0505

Alternate gene names: 86605222

Gene position: 523812-521665 (Counterclockwise)

Preceding gene: 86605223

Following gene: 86605221

Centisome position: 17.86

GC content: 63.5

Gene sequence:

>2148_bases
GTGAGCCGCCTGTCGGGGCTGCTGCCACCCCCAGCCGAGTTGCCAGCGCCTCGGGCCGAGGCCAAGGCAGCCCGACAGCG
CCCGCCCCTCCCCCAACAGCCGCAACTGCAGCGGGATCCCTTTGCGTTGGATCCCTTGGCCAGCCTCTCCTACGTGCCCG
CCATCATGTATCACGATGTGGTGGCCGGCCGCAAAGAGGTTTGGTTTGACACCACGGCGGCGGAGCTGCGACAGCACTTT
GAAGCCATCAAGCAGGCGGGGCTGATTCCCATCCACATCGACCAGCTTTACAAACACCTGCGAGATGGGGATCCCTTGCC
GGAAAAGGCCATTTTGCTCACCTTTGACGACGCCTACCTTGGGCTTTACGAAAACGCCTACCCGCTTTTGAAGGAGTACA
ACTACCCCGCCACCTACTTTGTGCAGACCGGCTTTGTCGGCGTGCCCACCAGCAAAGATCACTTCACCTGGGATCAGATG
CGGGAGATGGATGCCAGCGGGTTGATCGACTTTGCTGCCCACACCGTCAACCATCCCCCTGACCTACGGGTGCTAGACGA
TGCCCGCCTGCGGCGAGAGGTGTTTGACTGCAAGACCAAGCTGGAAGAGGAGCTGGGCCACCCCATCCACTACTTCGCCT
ATCCGGAAGGCAATCGGGACGAGCGGGTAAAGCAATACCTGGCCGAGGCGGGTTACTGGATGGCCTTTACGATGGATCCC
GGCTTTACGGGACAGTCGCCCAACTTGCTGGAGGTACGGCGCTTTAACCAGTTTCGCATCACCGAGGCCATCATCGGCGC
CCGCACCTTCACCCTCAGCCGCAGCCCCGACTACTGGCTGGATGTGACTCAGCCCCTGGCCCCGACCGATGAGGTCATTG
ACGGGGTGAGGATCCTCACCATCCGCGGCGGACGGGCAGCCACGGTGCACGCGGAGCGGCGCTACGAGGTGAGAACCTTG
GCCCAGCGCTACCAGGCCGATGCCGGCATCAACGGCAGCTTCTTCTCCATTCCTTGGATCAACTCCGCCAGCAACGTCAT
GGTGGGACCGGTGATGGCCGCCAACCACAAGACGTTCATCCCCGGTCGCCCCGAAGACGACAAGGTGGTGCGCGGTCGCC
CCCTGGTGCTGCTGGGCAGGGATCGGCTGCGCTTTGTGCCTTTTGATCCCGACACGATGACTCAGCTCGACAACCTTCGC
CAGCTCATGCCGGATGTCACGGACCTGTTTGTGGCGGGCTTGTGGCTGGTCAAGGATGGCCGGGCCCTTTCGCCAGCGGA
GATTGACTCGTTTCGCCTCTCTAGCGCCGCCGAGTTCCGACCCCGCGCCTTTTTTGGGGTGGACGACCAGGATCAGGTGG
TAATCGGAGTTACCAAAACCCACGTCAACGCCGCCATCCTGGCTAGCCTATTGCCCAAAATCGGGATCCGCGAGGCGGTG
CTGCTGGACTCTGGCTTTAGCACTTCGTTGGTTTACCGAGGAGAAATTCTGGCCACTGGCCATGCCGGCCCCAACCAGCC
CAGCCGCCCGGTGCCCCATGCCATTTTGCTCTACGACCTAACCCGTTTGTGGAGGGAGGATCCCCAGCAGCAGGCAAGCG
CCAACTCTCCCGGCAGCCAGCTGGAGGGGCTGGTGCAGTTGCTCCCCAGCGGCGACCAGGAAGTGGCCAAGGCGCAGCTG
GAGAGCATCCTGGCCGGCCAGCGCACCCTCAAGCGGGGGGAGCGGGGCCCGGCCGTGGTGGCGGTGCAACTGGGCTTAAG
CCGCCTGGCCGCTCAGCAGGGACGGCTGGATCTGCTCCCCTCTGGCCCCGATGGGGTGTATGGCAATGAGGTGGCCCAGG
CAGTGGCAGAGTTGCTGTTGACCGATCGCGTCAGCGGGACGGAGTCCTTAGCTGGGGGCGGTGAGACGGGATCCCCGCAA
ACAACCCCCACTCCCCTGGTGGCGGGAACGGCAACCCTGTCCCGATCGCGTCCGTGGGACGGAGTCCTTAGGGTGGATGC
CATCGATGCTCAACTGCTGCAACGCTTACTGGAGCGGGTTAATCTCGCCCCAGCCTCTGTGTTGGTGGATACCCGTCTGG
AGCGGCCAACTTGGCCTCTGGAGCGCAAGCCGACCCGGAAGCTGCTGCCGAGAGCGGCTCTGGATTGA

Upstream 100 bases:

>100_bases
GTTGCGCTTCCAGCTGCTCCGCTTCTTGGCTTTGTTGACCACAGTGCTGGGATTTGGGACGGGAGCCCTGGTGGCCTGGG
CCACTGCCCATCCTGGTTGG

Downstream 100 bases:

>100_bases
CATACTCCCCACAGCCATAGCTGCAAAGAGTTGGTGAGCGCAGCGATTTAACCTCAAGCTGAGGCCAAAGCCAGGCTAGG
CCCCCCTGGTTTGCAGGGTG

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 715; Mature: 714

Protein sequence:

>715_residues
MSRLSGLLPPPAELPAPRAEAKAARQRPPLPQQPQLQRDPFALDPLASLSYVPAIMYHDVVAGRKEVWFDTTAAELRQHF
EAIKQAGLIPIHIDQLYKHLRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQM
REMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKTKLEEELGHPIHYFAYPEGNRDERVKQYLAEAGYWMAFTMDP
GFTGQSPNLLEVRRFNQFRITEAIIGARTFTLSRSPDYWLDVTQPLAPTDEVIDGVRILTIRGGRAATVHAERRYEVRTL
AQRYQADAGINGSFFSIPWINSASNVMVGPVMAANHKTFIPGRPEDDKVVRGRPLVLLGRDRLRFVPFDPDTMTQLDNLR
QLMPDVTDLFVAGLWLVKDGRALSPAEIDSFRLSSAAEFRPRAFFGVDDQDQVVIGVTKTHVNAAILASLLPKIGIREAV
LLDSGFSTSLVYRGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPQQQASANSPGSQLEGLVQLLPSGDQEVAKAQL
ESILAGQRTLKRGERGPAVVAVQLGLSRLAAQQGRLDLLPSGPDGVYGNEVAQAVAELLLTDRVSGTESLAGGGETGSPQ
TTPTPLVAGTATLSRSRPWDGVLRVDAIDAQLLQRLLERVNLAPASVLVDTRLERPTWPLERKPTRKLLPRAALD

Sequences:

>Translated_715_residues
MSRLSGLLPPPAELPAPRAEAKAARQRPPLPQQPQLQRDPFALDPLASLSYVPAIMYHDVVAGRKEVWFDTTAAELRQHF
EAIKQAGLIPIHIDQLYKHLRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQM
REMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKTKLEEELGHPIHYFAYPEGNRDERVKQYLAEAGYWMAFTMDP
GFTGQSPNLLEVRRFNQFRITEAIIGARTFTLSRSPDYWLDVTQPLAPTDEVIDGVRILTIRGGRAATVHAERRYEVRTL
AQRYQADAGINGSFFSIPWINSASNVMVGPVMAANHKTFIPGRPEDDKVVRGRPLVLLGRDRLRFVPFDPDTMTQLDNLR
QLMPDVTDLFVAGLWLVKDGRALSPAEIDSFRLSSAAEFRPRAFFGVDDQDQVVIGVTKTHVNAAILASLLPKIGIREAV
LLDSGFSTSLVYRGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPQQQASANSPGSQLEGLVQLLPSGDQEVAKAQL
ESILAGQRTLKRGERGPAVVAVQLGLSRLAAQQGRLDLLPSGPDGVYGNEVAQAVAELLLTDRVSGTESLAGGGETGSPQ
TTPTPLVAGTATLSRSRPWDGVLRVDAIDAQLLQRLLERVNLAPASVLVDTRLERPTWPLERKPTRKLLPRAALD
>Mature_714_residues
SRLSGLLPPPAELPAPRAEAKAARQRPPLPQQPQLQRDPFALDPLASLSYVPAIMYHDVVAGRKEVWFDTTAAELRQHFE
AIKQAGLIPIHIDQLYKHLRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQMR
EMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKTKLEEELGHPIHYFAYPEGNRDERVKQYLAEAGYWMAFTMDPG
FTGQSPNLLEVRRFNQFRITEAIIGARTFTLSRSPDYWLDVTQPLAPTDEVIDGVRILTIRGGRAATVHAERRYEVRTLA
QRYQADAGINGSFFSIPWINSASNVMVGPVMAANHKTFIPGRPEDDKVVRGRPLVLLGRDRLRFVPFDPDTMTQLDNLRQ
LMPDVTDLFVAGLWLVKDGRALSPAEIDSFRLSSAAEFRPRAFFGVDDQDQVVIGVTKTHVNAAILASLLPKIGIREAVL
LDSGFSTSLVYRGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPQQQASANSPGSQLEGLVQLLPSGDQEVAKAQLE
SILAGQRTLKRGERGPAVVAVQLGLSRLAAQQGRLDLLPSGPDGVYGNEVAQAVAELLLTDRVSGTESLAGGGETGSPQT
TPTPLVAGTATLSRSRPWDGVLRVDAIDAQLLQRLLERVNLAPASVLVDTRLERPTWPLERKPTRKLLPRAALD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1787260, Length=252, Percent_Identity=27.3809523809524, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 79159; Mature: 79028

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLSGLLPPPAELPAPRAEAKAARQRPPLPQQPQLQRDPFALDPLASLSYVPAIMYHDV
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VAGRKEVWFDTTAAELRQHFEAIKQAGLIPIHIDQLYKHLRDGDPLPEKAILLTFDDAYL
HCCCHHEEECCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCEEEEEECCHHH
GLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQMREMDASGLIDFAAHTVNHPP
HHHHCCCHHHHHCCCCEEEEEECCEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCC
DLRVLDDARLRREVFDCKTKLEEELGHPIHYFAYPEGNRDERVKQYLAEAGYWMAFTMDP
CCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
GFTGQSPNLLEVRRFNQFRITEAIIGARTFTLSRSPDYWLDVTQPLAPTDEVIDGVRILT
CCCCCCCCCHHHHHCCHHHHHHHHHCCEEEEECCCCCCEEECCCCCCCCHHHHCCEEEEE
IRGGRAATVHAERRYEVRTLAQRYQADAGINGSFFSIPWINSASNVMVGPVMAANHKTFI
EECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEECCEEECCCCEEC
PGRPEDDKVVRGRPLVLLGRDRLRFVPFDPDTMTQLDNLRQLMPDVTDLFVAGLWLVKDG
CCCCCCCCEECCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
RALSPAEIDSFRLSSAAEFRPRAFFGVDDQDQVVIGVTKTHVNAAILASLLPKIGIREAV
CCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEE
LLDSGFSTSLVYRGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPQQQASANSPGSQ
EECCCCCCEEEEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCHHH
LEGLVQLLPSGDQEVAKAQLESILAGQRTLKRGERGPAVVAVQLGLSRLAAQQGRLDLLP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCEEECC
SGPDGVYGNEVAQAVAELLLTDRVSGTESLAGGGETGSPQTTPTPLVAGTATLSRSRPWD
CCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEEECCHHHCCCCCCC
GVLRVDAIDAQLLQRLLERVNLAPASVLVDTRLERPTWPLERKPTRKLLPRAALD
CEEEEEHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCCCHHHHCCHHCCC
>Mature Secondary Structure 
SRLSGLLPPPAELPAPRAEAKAARQRPPLPQQPQLQRDPFALDPLASLSYVPAIMYHDV
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VAGRKEVWFDTTAAELRQHFEAIKQAGLIPIHIDQLYKHLRDGDPLPEKAILLTFDDAYL
HCCCHHEEECCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCEEEEEECCHHH
GLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQMREMDASGLIDFAAHTVNHPP
HHHHCCCHHHHHCCCCEEEEEECCEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCC
DLRVLDDARLRREVFDCKTKLEEELGHPIHYFAYPEGNRDERVKQYLAEAGYWMAFTMDP
CCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
GFTGQSPNLLEVRRFNQFRITEAIIGARTFTLSRSPDYWLDVTQPLAPTDEVIDGVRILT
CCCCCCCCCHHHHHCCHHHHHHHHHCCEEEEECCCCCCEEECCCCCCCCHHHHCCEEEEE
IRGGRAATVHAERRYEVRTLAQRYQADAGINGSFFSIPWINSASNVMVGPVMAANHKTFI
EECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEECCEEECCCCEEC
PGRPEDDKVVRGRPLVLLGRDRLRFVPFDPDTMTQLDNLRQLMPDVTDLFVAGLWLVKDG
CCCCCCCCEECCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
RALSPAEIDSFRLSSAAEFRPRAFFGVDDQDQVVIGVTKTHVNAAILASLLPKIGIREAV
CCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEE
LLDSGFSTSLVYRGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPQQQASANSPGSQ
EECCCCCCEEEEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCHHH
LEGLVQLLPSGDQEVAKAQLESILAGQRTLKRGERGPAVVAVQLGLSRLAAQQGRLDLLP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCEEECC
SGPDGVYGNEVAQAVAELLLTDRVSGTESLAGGGETGSPQTTPTPLVAGTATLSRSRPWD
CCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEEECCHHHCCCCCCC
GVLRVDAIDAQLLQRLLERVNLAPASVLVDTRLERPTWPLERKPTRKLLPRAALD
CEEEEEHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCCCHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]