| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is yugF [H]
Identifier: 86604874
GI number: 86604874
Start: 139456
End: 140352
Strand: Reverse
Name: yugF [H]
Synonym: CYA_0145
Alternate gene names: 86604874
Gene position: 140352-139456 (Counterclockwise)
Preceding gene: 86604877
Following gene: 86604872
Centisome position: 4.79
GC content: 65.89
Gene sequence:
>897_bases TTGGCCCCCCGCGAGGGGCGCTGGTTCTGGCAGGGCCAGTCCATCCGCTACCAACAGGCGGGATCCGCCGGCCCGGCGGT GGTGCTTATCCACGGTTTTGGGGCCAGCAGCGACCACTGGCGGAAAAATTTGCCGGAGCTGGGGCGGCACTGCCGCGTGT ACGCCCTTGACCTCCTGGGATTTGGGGGATCCGCCAAGCCCTTGCCGGGATCCCCTTTCCCCTACACCTTTGAAACCTGG GGCGCCCAGGTGGCCGATTTTGGGCGGGAGGTGGTGGGGGAGCCAGCTTATCTGGTGGGCAACTCCATTGGTTGCATTGT GGCCTTGCAGGCGGCTGTTTTCGAGCCAGGCCAGGCCTTGGGGGTGGCGATGTTGGATCCCTCACTGCGGCTGTTGCACG AGCGCAAGCGTCGCCAGATCTCTTGGCTGCGCCGCCGAACCACCCCCCTCATCCAGTCCTTGCTGGGGTGGCCCCCCTTC GGCCGGTTTTTCTTTGCCCAGATAGCCCAGCCCTGGGCCATTCGCAACATCCTCCTCCAAGCGTATGGGCGCAAGGAAGC GGTTACGGAAGACCTGGTGCAGCTTTTGCTGCGACCGGCCCTCGATCCGGGAGCGGCAGAGGTGTTCTTGGCCTTTGTGC GCTACTCCCAGGGGCCCTTGGCCGAGGATCTCCTGCCCCAGGTCACCTGCCCCGTCCTCATCCTCTGGGGAGAGGTGGAT CCCTGGGAGCCCATTGCTTTGGGGCGGGCCTTGGCCGAGTTCCCCTGCGTGGTGGGGTTCATCCCCCTGCCGGGAGTTGG CCACTGCCCCCAAGACGAGGCCCCGGAGCTGGTCAACCCGCTGCTGCTGGCTTGGATCCGGGATCCCACCCGAAAACCTG AGCTCGGGATCCCCTAG
Upstream 100 bases:
>100_bases GAACTTGCTTCCCAATCCAGATTGTGCCAACAAAAAAGAGCGCTATCCTTCGGGGTGAGATAGGGATTCCATGCTCTCTG AACAGCCTTCTACAAGCGTC
Downstream 100 bases:
>100_bases CAACTCCCGCGAGGAGGAAGGTCTGGGTTCTCCCGCCTAAGAGCGACCGAGGTGCTCCAGTTGATCCAGGTTGGGGCCGC TCAGCCGGAAGGCCTGGCCA
Product: alpha/beta fold family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MAPREGRWFWQGQSIRYQQAGSAGPAVVLIHGFGASSDHWRKNLPELGRHCRVYALDLLGFGGSAKPLPGSPFPYTFETW GAQVADFGREVVGEPAYLVGNSIGCIVALQAAVFEPGQALGVAMLDPSLRLLHERKRRQISWLRRRTTPLIQSLLGWPPF GRFFFAQIAQPWAIRNILLQAYGRKEAVTEDLVQLLLRPALDPGAAEVFLAFVRYSQGPLAEDLLPQVTCPVLILWGEVD PWEPIALGRALAEFPCVVGFIPLPGVGHCPQDEAPELVNPLLLAWIRDPTRKPELGIP
Sequences:
>Translated_298_residues MAPREGRWFWQGQSIRYQQAGSAGPAVVLIHGFGASSDHWRKNLPELGRHCRVYALDLLGFGGSAKPLPGSPFPYTFETW GAQVADFGREVVGEPAYLVGNSIGCIVALQAAVFEPGQALGVAMLDPSLRLLHERKRRQISWLRRRTTPLIQSLLGWPPF GRFFFAQIAQPWAIRNILLQAYGRKEAVTEDLVQLLLRPALDPGAAEVFLAFVRYSQGPLAEDLLPQVTCPVLILWGEVD PWEPIALGRALAEFPCVVGFIPLPGVGHCPQDEAPELVNPLLLAWIRDPTRKPELGIP >Mature_297_residues APREGRWFWQGQSIRYQQAGSAGPAVVLIHGFGASSDHWRKNLPELGRHCRVYALDLLGFGGSAKPLPGSPFPYTFETWG AQVADFGREVVGEPAYLVGNSIGCIVALQAAVFEPGQALGVAMLDPSLRLLHERKRRQISWLRRRTTPLIQSLLGWPPFG RFFFAQIAQPWAIRNILLQAYGRKEAVTEDLVQLLLRPALDPGAAEVFLAFVRYSQGPLAEDLLPQVTCPVLILWGEVDP WEPIALGRALAEFPCVVGFIPLPGVGHCPQDEAPELVNPLLLAWIRDPTRKPELGIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dmpD/todF/xylF esterase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 32906; Mature: 32774
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPREGRWFWQGQSIRYQQAGSAGPAVVLIHGFGASSDHWRKNLPELGRHCRVYALDLLG CCCCCCCEEECCCCEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHEEEEEEEEC FGGSAKPLPGSPFPYTFETWGAQVADFGREVVGEPAYLVGNSIGCIVALQAAVFEPGQAL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCHHC GVAMLDPSLRLLHERKRRQISWLRRRTTPLIQSLLGWPPFGRFFFAQIAQPWAIRNILLQ EEEHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH AYGRKEAVTEDLVQLLLRPALDPGAAEVFLAFVRYSQGPLAEDLLPQVTCPVLILWGEVD HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCC PWEPIALGRALAEFPCVVGFIPLPGVGHCPQDEAPELVNPLLLAWIRDPTRKPELGIP CCCHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure APREGRWFWQGQSIRYQQAGSAGPAVVLIHGFGASSDHWRKNLPELGRHCRVYALDLLG CCCCCCEEECCCCEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHEEEEEEEEC FGGSAKPLPGSPFPYTFETWGAQVADFGREVVGEPAYLVGNSIGCIVALQAAVFEPGQAL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCHHC GVAMLDPSLRLLHERKRRQISWLRRRTTPLIQSLLGWPPFGRFFFAQIAQPWAIRNILLQ EEEHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH AYGRKEAVTEDLVQLLLRPALDPGAAEVFLAFVRYSQGPLAEDLLPQVTCPVLILWGEVD HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCC PWEPIALGRALAEFPCVVGFIPLPGVGHCPQDEAPELVNPLLLAWIRDPTRKPELGIP CCCHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]