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The map label for this gene is cbiD

Identifier: 86604848

GI number: 86604848

Start: 113491

End: 114609

Strand: Reverse

Name: cbiD

Synonym: CYA_0118

Alternate gene names: 86604848

Gene position: 114609-113491 (Counterclockwise)

Preceding gene: 86604850

Following gene: 86604846

Centisome position: 3.91

GC content: 63.27

Gene sequence:

>1119_bases
ATGCAGGATGCGGTTCCCCCCTCGTCACAACAGGGCTATACCTTGCCCGTGTTTGCGGTGGCTGCTGCTAAAGCCGCTCT
CCGCCGCCTTCTGGGGATCCCTTTGGAGCAGGACGGCGCTCATCCTGTCATTGCAGTGCAGGTGGAGCCCCAGTTCCCTG
ATGTTTGCATCCGGATCCCAGTGGAGCAGGTGGCTGCTCTCTCGGAGAACACCGCTTTGGCCATTACCCGTTCGGATCCC
GGCCCTCATCTGGATCTCACCCGCAACACGCCGGTCTGGGCCTGGGTGGGCTTGGAGGAACGGGATCCCGCCACTCCGCC
TTTGCTCCTGGAAGCGGGAGAGGGGCTGGGGCGGCATGCTGATGGCAGCCCGGCCATCTATGCTTACGCTCGGCGCCTGT
TTGAGATCAATCTTTCGCCTGGGATCCCGGATGGGTATCGCCTGCGGGTGCGCATCATCTTGCCGGAGGGAAAACTCTTG
GCGGAGCGGACTTCCAATGCGGCGTTTGGGGTGCTGGAGGGACTGGCTCTCTTGGGAACGCGGGCCGAGGTGGAGCCTTC
TGCCAGTGCCGAGAGCCTGGAGCGGGCCCGCCGCGAATTGCAACAGAAATTGGCCAACCACCGGCATCTGGCCTTTTGCG
TGGGCAGCCATGGGCAGCAGGTGGCCTTGCGGCAAGGGATCCCAGCAGAACAAATTCTACTGGTGGCCAATTGGATCGGG
CCGCTGCTGGTGGAAGCGGCATTGCGAGGGGCAGACTCGATTCATTTGATCGGCTACCACGGCAAGTTGATCAAGCTGGC
GGGGGGCATTTTCACCACTTCCAGCCATGTGGCCGATGCCCGCCTGGAGATCTTGGCGGCAGCCCTCATCCGCTGCGGGG
GAACAGCCGAGCAGGCGCGGCAGGTGCTGGAGCTGAGGACGGTAGAGGCAGCGGTGCAGTATCTGAAGGATCTGGGCTGG
GCAGAGCCGGTGCTGCAGGAGCTTTCCCGACAAATCCGCCAGCGGGCGACAGCCTATGTGCAAAAGTATGCCGCTCGATC
CCTGCCGGTGCAGGTAACCCTGTTCGATCGCCAGGGCCAGGTCTGCGCTCAGGCGGGGATCCCAGGTCGTCTCGATTGA

Upstream 100 bases:

>100_bases
CCTATCAAGCCAGTCCTGCTGGCTGGCGTCGGCCACAATTGAGACAGGCTCTCTCCAAAGTTTTTTCCAGAGCAGGTTCC
TCTCTATTTCCAGGCAAAAA

Downstream 100 bases:

>100_bases
GACAAGGACGCCGCCACCCTACCCCAATCCTGATATGGCTCCCTTTTCAGGGAAAAAAGCGAGCAAAAGAAAGCTGGAGA
AGCAAAGCCGCTCCCCCAGC

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MQDAVPPSSQQGYTLPVFAVAAAKAALRRLLGIPLEQDGAHPVIAVQVEPQFPDVCIRIPVEQVAALSENTALAITRSDP
GPHLDLTRNTPVWAWVGLEERDPATPPLLLEAGEGLGRHADGSPAIYAYARRLFEINLSPGIPDGYRLRVRIILPEGKLL
AERTSNAAFGVLEGLALLGTRAEVEPSASAESLERARRELQQKLANHRHLAFCVGSHGQQVALRQGIPAEQILLVANWIG
PLLVEAALRGADSIHLIGYHGKLIKLAGGIFTTSSHVADARLEILAAALIRCGGTAEQARQVLELRTVEAAVQYLKDLGW
AEPVLQELSRQIRQRATAYVQKYAARSLPVQVTLFDRQGQVCAQAGIPGRLD

Sequences:

>Translated_372_residues
MQDAVPPSSQQGYTLPVFAVAAAKAALRRLLGIPLEQDGAHPVIAVQVEPQFPDVCIRIPVEQVAALSENTALAITRSDP
GPHLDLTRNTPVWAWVGLEERDPATPPLLLEAGEGLGRHADGSPAIYAYARRLFEINLSPGIPDGYRLRVRIILPEGKLL
AERTSNAAFGVLEGLALLGTRAEVEPSASAESLERARRELQQKLANHRHLAFCVGSHGQQVALRQGIPAEQILLVANWIG
PLLVEAALRGADSIHLIGYHGKLIKLAGGIFTTSSHVADARLEILAAALIRCGGTAEQARQVLELRTVEAAVQYLKDLGW
AEPVLQELSRQIRQRATAYVQKYAARSLPVQVTLFDRQGQVCAQAGIPGRLD
>Mature_372_residues
MQDAVPPSSQQGYTLPVFAVAAAKAALRRLLGIPLEQDGAHPVIAVQVEPQFPDVCIRIPVEQVAALSENTALAITRSDP
GPHLDLTRNTPVWAWVGLEERDPATPPLLLEAGEGLGRHADGSPAIYAYARRLFEINLSPGIPDGYRLRVRIILPEGKLL
AERTSNAAFGVLEGLALLGTRAEVEPSASAESLERARRELQQKLANHRHLAFCVGSHGQQVALRQGIPAEQILLVANWIG
PLLVEAALRGADSIHLIGYHGKLIKLAGGIFTTSSHVADARLEILAAALIRCGGTAEQARQVLELRTVEAAVQYLKDLGW
AEPVLQELSRQIRQRATAYVQKYAARSLPVQVTLFDRQGQVCAQAGIPGRLD

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 40160; Mature: 40160

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDAVPPSSQQGYTLPVFAVAAAKAALRRLLGIPLEQDGAHPVIAVQVEPQFPDVCIRIP
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECC
VEQVAALSENTALAITRSDPGPHLDLTRNTPVWAWVGLEERDPATPPLLLEAGEGLGRHA
HHHHHHHCCCCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCC
DGSPAIYAYARRLFEINLSPGIPDGYRLRVRIILPEGKLLAERTSNAAFGVLEGLALLGT
CCCCHHHHHHHHHEEEECCCCCCCCEEEEEEEEECCCCEEHHHCCCCHHHHHHHHHHHCC
RAEVEPSASAESLERARRELQQKLANHRHLAFCVGSHGQQVALRQGIPAEQILLVANWIG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHHCCCCHHHHHHHHHHHH
PLLVEAALRGADSIHLIGYHGKLIKLAGGIFTTSSHVADARLEILAAALIRCGGTAEQAR
HHHHHHHHCCCCCEEEEEECCEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHH
QVLELRTVEAAVQYLKDLGWAEPVLQELSRQIRQRATAYVQKYAARSLPVQVTLFDRQGQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
VCAQAGIPGRLD
EEECCCCCCCCC
>Mature Secondary Structure
MQDAVPPSSQQGYTLPVFAVAAAKAALRRLLGIPLEQDGAHPVIAVQVEPQFPDVCIRIP
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECC
VEQVAALSENTALAITRSDPGPHLDLTRNTPVWAWVGLEERDPATPPLLLEAGEGLGRHA
HHHHHHHCCCCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCC
DGSPAIYAYARRLFEINLSPGIPDGYRLRVRIILPEGKLLAERTSNAAFGVLEGLALLGT
CCCCHHHHHHHHHEEEECCCCCCCCEEEEEEEEECCCCEEHHHCCCCHHHHHHHHHHHCC
RAEVEPSASAESLERARRELQQKLANHRHLAFCVGSHGQQVALRQGIPAEQILLVANWIG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHHCCCCHHHHHHHHHHHH
PLLVEAALRGADSIHLIGYHGKLIKLAGGIFTTSSHVADARLEILAAALIRCGGTAEQAR
HHHHHHHHCCCCCEEEEEECCEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHH
QVLELRTVEAAVQYLKDLGWAEPVLQELSRQIRQRATAYVQKYAARSLPVQVTLFDRQGQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
VCAQAGIPGRLD
EEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA