Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86604846

Identifier: 86604846

GI number: 86604846

Start: 110298

End: 111221

Strand: Reverse

Name: 86604846

Synonym: CYA_0116

Alternate gene names: NA

Gene position: 111221-110298 (Counterclockwise)

Preceding gene: 86604848

Following gene: 86604845

Centisome position: 3.79

GC content: 61.8

Gene sequence:

>924_bases
GTGAACATGCTGAAACGAATCAGTCGAAGCTGCCGGCCCCTGCTGGCCATTGCCCTGGCTTTGATCTTGGCCTTGGCCCC
CGTCAGTGCCGTCTGGGCGCGCAGTGGTGGTCGCATTGGCGGTGGCTCTTTCCGCTCTCCGACCTTCTCTGCCCCCCGCT
CCGTTGGCCCCCGCTCGGCTCCGGTGTACCCCAGCTATGGAGGGGGGTTCGGCTTTCCCCTGGTGGTGCCCTTTTTCTGG
GGTGGTGGTGGCGGCCTGCTGACACTGCTGCTGCTCATCGGGGCAGGTAGCTTTCTGGTGCGCAGCCTGCGCTCGGCTGT
TTCCGAAGATGGCGACGAGGGGGTTGCTGACCCGCCAGTAACCCTGGCTCAGGTGAAAGTGGGCCTGCTGGCCAGCGCCC
GGCAACTGCAAAAAGACATGAACGCCCTGGCTCTGGAAGCGGATACCCAATCGCCGGAAGGGCTGAGCCAACTCCTGCAA
GAGGTCACCCTCGGCTTGATGCGCTACAGCGACTACTGGGCCTATGGCCATGCCCAAGCAGAGAAGCTGCCTCTCTCCCG
CGCCGAGTCTCTGTTCTACCAAGCCTCTTTGCAAGAGCGCAGCAAGTTTAGCGCCGAAACCCTCAGCAACCGCAACAACC
AAATCCAACAGGTTCCCCAAGCGGTCCTTAAACGCGCTGCTGCCGGGATCCCGGATGTCGGCGAGTATCTGGTCGTTACT
CTACTAGTTGCGTATCGCGGCAACTTAGGTACACTACCTGTAGTTAAATCTGCGGCGGATCTGCGGCAGTGCCTGCTGCA
GTTGGCCTCCATTCCGGCGGAGCGAATTGTGGCGATCGAAGTGCTGTGGACGCCGCAGTTGGAAGGAGACACCCTGTCGG
CAGAGGCGCTGTTGACCGAGTACCCGGAAATGCGGCTCCTGTGA

Upstream 100 bases:

>100_bases
AGCAATGGCTCAAATAGCCCGCTAAAAGGTTCGGATCCCTGCCCTCTGCTGTCTAAGGAAAGAGCATACAATTGAGGAAG
ACTAGCCCCGTGATGGACAC

Downstream 100 bases:

>100_bases
GAGCGCTGGAGTGAGGAGACGGCTGCTGTCGGCTAGGGGTCTCGCCGCCAAGGGAGGTTCTATGTCCGGGTTTGATGCTT
CGGCAGACAGGAGCCGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSAPVYPSYGGGFGFPLVVPFFW
GGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPVTLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQ
EVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT
LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL

Sequences:

>Translated_307_residues
MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSAPVYPSYGGGFGFPLVVPFFW
GGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPVTLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQ
EVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT
LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL
>Mature_307_residues
MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSAPVYPSYGGGFGFPLVVPFFW
GGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPVTLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQ
EVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT
LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL

Specific function: Unknown

COG id: COG4371

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32834; Mature: 32834

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PVYPSYGGGFGFPLVVPFFWGGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPV
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCH
TLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAYGHAQA
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTE
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCCCHHHHHHHH
YPEMRLL
CCCCCCC
>Mature Secondary Structure
MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PVYPSYGGGFGFPLVVPFFWGGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPV
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCH
TLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAYGHAQA
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTE
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCCCHHHHHHHH
YPEMRLL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA