| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86604846
Identifier: 86604846
GI number: 86604846
Start: 110298
End: 111221
Strand: Reverse
Name: 86604846
Synonym: CYA_0116
Alternate gene names: NA
Gene position: 111221-110298 (Counterclockwise)
Preceding gene: 86604848
Following gene: 86604845
Centisome position: 3.79
GC content: 61.8
Gene sequence:
>924_bases GTGAACATGCTGAAACGAATCAGTCGAAGCTGCCGGCCCCTGCTGGCCATTGCCCTGGCTTTGATCTTGGCCTTGGCCCC CGTCAGTGCCGTCTGGGCGCGCAGTGGTGGTCGCATTGGCGGTGGCTCTTTCCGCTCTCCGACCTTCTCTGCCCCCCGCT CCGTTGGCCCCCGCTCGGCTCCGGTGTACCCCAGCTATGGAGGGGGGTTCGGCTTTCCCCTGGTGGTGCCCTTTTTCTGG GGTGGTGGTGGCGGCCTGCTGACACTGCTGCTGCTCATCGGGGCAGGTAGCTTTCTGGTGCGCAGCCTGCGCTCGGCTGT TTCCGAAGATGGCGACGAGGGGGTTGCTGACCCGCCAGTAACCCTGGCTCAGGTGAAAGTGGGCCTGCTGGCCAGCGCCC GGCAACTGCAAAAAGACATGAACGCCCTGGCTCTGGAAGCGGATACCCAATCGCCGGAAGGGCTGAGCCAACTCCTGCAA GAGGTCACCCTCGGCTTGATGCGCTACAGCGACTACTGGGCCTATGGCCATGCCCAAGCAGAGAAGCTGCCTCTCTCCCG CGCCGAGTCTCTGTTCTACCAAGCCTCTTTGCAAGAGCGCAGCAAGTTTAGCGCCGAAACCCTCAGCAACCGCAACAACC AAATCCAACAGGTTCCCCAAGCGGTCCTTAAACGCGCTGCTGCCGGGATCCCGGATGTCGGCGAGTATCTGGTCGTTACT CTACTAGTTGCGTATCGCGGCAACTTAGGTACACTACCTGTAGTTAAATCTGCGGCGGATCTGCGGCAGTGCCTGCTGCA GTTGGCCTCCATTCCGGCGGAGCGAATTGTGGCGATCGAAGTGCTGTGGACGCCGCAGTTGGAAGGAGACACCCTGTCGG CAGAGGCGCTGTTGACCGAGTACCCGGAAATGCGGCTCCTGTGA
Upstream 100 bases:
>100_bases AGCAATGGCTCAAATAGCCCGCTAAAAGGTTCGGATCCCTGCCCTCTGCTGTCTAAGGAAAGAGCATACAATTGAGGAAG ACTAGCCCCGTGATGGACAC
Downstream 100 bases:
>100_bases GAGCGCTGGAGTGAGGAGACGGCTGCTGTCGGCTAGGGGTCTCGCCGCCAAGGGAGGTTCTATGTCCGGGTTTGATGCTT CGGCAGACAGGAGCCGTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSAPVYPSYGGGFGFPLVVPFFW GGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPVTLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQ EVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL
Sequences:
>Translated_307_residues MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSAPVYPSYGGGFGFPLVVPFFW GGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPVTLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQ EVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL >Mature_307_residues MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSAPVYPSYGGGFGFPLVVPFFW GGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPVTLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQ EVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL
Specific function: Unknown
COG id: COG4371
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32834; Mature: 32834
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PVYPSYGGGFGFPLVVPFFWGGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPV CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCH TLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAYGHAQA HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH EKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTE HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCCCHHHHHHHH YPEMRLL CCCCCCC >Mature Secondary Structure MNMLKRISRSCRPLLAIALALILALAPVSAVWARSGGRIGGGSFRSPTFSAPRSVGPRSA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PVYPSYGGGFGFPLVVPFFWGGGGGLLTLLLLIGAGSFLVRSLRSAVSEDGDEGVADPPV CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCH TLAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAYGHAQA HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH EKLPLSRAESLFYQASLQERSKFSAETLSNRNNQIQQVPQAVLKRAAAGIPDVGEYLVVT HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH LLVAYRGNLGTLPVVKSAADLRQCLLQLASIPAERIVAIEVLWTPQLEGDTLSAEALLTE HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCCCHHHHHHHH YPEMRLL CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA