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The map label for this gene is ydcM [C]

Identifier: 86604821

GI number: 86604821

Start: 88306

End: 89487

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0091

Alternate gene names: 86604821

Gene position: 89487-88306 (Counterclockwise)

Preceding gene: 86604822

Following gene: 86604820

Centisome position: 3.05

GC content: 59.14

Gene sequence:

>1182_bases
ATGGCCCAAGTCCTGACTATCTCCTGCAAACTCAAGGTGTCTGTGTCGCAAGCCGCCAAGCTGGATGCGACCCTGGATGC
CTTCGCAAAGGCACTGAACTGCGTGAATGAGAACACACCAGAGAAGATAGTCAACGCCGTCAAGCTCCAATCTCTCTGCT
ACCGCGAGATTCGTACCCGCTTCGGACTATCCAGCAACCTGGCACAACAGGTGTGCAGAAGGTTAGCCGGTGCCCGCAAG
GTTGCCCAGCAGAAAAACCGTCCAGTCAAGGCGTTCAAGTCTGGCTTTGTTACCTACGATGCCCGCATCTTCTCGTTCCG
TGAGAAGGACTGGACGGTGTCGCTGACCACCGTTGAGGGACGGGAACGCTTTGAACTGGATATAGGTCACTACCAGCGCG
GCCTGCTAGCGGGTTCAAATCCCAAAGCAGCCACGTTGGTCAAGCGCCAAGGCGGCTCCTACTCCATCCAGATTGGCGTG
GAGTCTGAGGTGCCGGAGCCGGAGCACGCCGTCAAGGCCATTGGTGTGGACTTGGGTAGGAGAGATATTGCCCACACCTC
TGAGGGAGATAACTGGAATGGACAGCAGTTGAACCAGGTCAGAGACCACTACTCCCGTTTGAGAGGGGTTCTCCAACGCA
AGGCCAGCAAGGGCACACGCAGTACACGACGTCGGTGTCAGCAACTGCTGCAACGGCTGTCTGGTCGGGAGAGACGCTTT
CAAACTTGGGTGAACCACTGCATCTCCAAGTCGATTGTTGCTAGGGCACTGGCCACTCACCGTTTTATTGCCTTGGAAGA
CCTGACCGGGATCCGGGAGCGGGTCAACCGGCAGCCGCGCAGCAAGACGGAGCGGCGGCGGGCAAACAGTTGGGCGTTCT
ACCAGTTGCGGCAGTTTGTGCACTACAAGGCGATGCGGGCAGGGGTGAAGGTTGTGGTGGTTTCGCCGGCCTACAGCTCG
CAGACCTGCCACCAGTGCCTGTGGATTGGGCAACGGGAAGGGAAGCATTTTCGCTGTGTGAACCCGGCTTGTGGTTGGGA
AGGGGATGCAGATTTGAACGGTGCCAACGGGATTGCACTTTTGGGGGTTGCTGTAAACCAGCCCCCCTCAATCCCCCCGC
CCCCCTGCCCCCGTATACGGGGGGTTGGGGGGCTGGAAGGGGGGGCGGTCGGAGCCGGGTAG

Upstream 100 bases:

>100_bases
CCCTGTACCCCCCTATATCCCCCCGTATACGGGGGGACTGGGGGGCCGGGGGCCGTGCCGGTCAGGGTCGGGAGGAATGC
GGACGACGTATAATCGTGAC

Downstream 100 bases:

>100_bases
TTTACAGCGTTATCCTATCTACCCTGCCGCCGGTGCGCAGCGAGCCGGATCAGGTTGGGCAGCCCGGTGTTGTCGGGAGC
TTTTATCCAAGACAAGACTT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAQVLTISCKLKVSVSQAAKLDATLDAFAKALNCVNENTPEKIVNAVKLQSLCYREIRTRFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKSGFVTYDARIFSFREKDWTVSLTTVEGRERFELDIGHYQRGLLAGSNPKAATLVKRQGGSYSIQIGV
ESEVPEPEHAVKAIGVDLGRRDIAHTSEGDNWNGQQLNQVRDHYSRLRGVLQRKASKGTRSTRRRCQQLLQRLSGRERRF
QTWVNHCISKSIVARALATHRFIALEDLTGIRERVNRQPRSKTERRRANSWAFYQLRQFVHYKAMRAGVKVVVVSPAYSS
QTCHQCLWIGQREGKHFRCVNPACGWEGDADLNGANGIALLGVAVNQPPSIPPPPCPRIRGVGGLEGGAVGAG

Sequences:

>Translated_393_residues
MAQVLTISCKLKVSVSQAAKLDATLDAFAKALNCVNENTPEKIVNAVKLQSLCYREIRTRFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKSGFVTYDARIFSFREKDWTVSLTTVEGRERFELDIGHYQRGLLAGSNPKAATLVKRQGGSYSIQIGV
ESEVPEPEHAVKAIGVDLGRRDIAHTSEGDNWNGQQLNQVRDHYSRLRGVLQRKASKGTRSTRRRCQQLLQRLSGRERRF
QTWVNHCISKSIVARALATHRFIALEDLTGIRERVNRQPRSKTERRRANSWAFYQLRQFVHYKAMRAGVKVVVVSPAYSS
QTCHQCLWIGQREGKHFRCVNPACGWEGDADLNGANGIALLGVAVNQPPSIPPPPCPRIRGVGGLEGGAVGAG
>Mature_392_residues
AQVLTISCKLKVSVSQAAKLDATLDAFAKALNCVNENTPEKIVNAVKLQSLCYREIRTRFGLSSNLAQQVCRRLAGARKV
AQQKNRPVKAFKSGFVTYDARIFSFREKDWTVSLTTVEGRERFELDIGHYQRGLLAGSNPKAATLVKRQGGSYSIQIGVE
SEVPEPEHAVKAIGVDLGRRDIAHTSEGDNWNGQQLNQVRDHYSRLRGVLQRKASKGTRSTRRRCQQLLQRLSGRERRFQ
TWVNHCISKSIVARALATHRFIALEDLTGIRERVNRQPRSKTERRRANSWAFYQLRQFVHYKAMRAGVKVVVVSPAYSSQ
TCHQCLWIGQREGKHFRCVNPACGWEGDADLNGANGIALLGVAVNQPPSIPPPPCPRIRGVGGLEGGAVGAG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=238, Percent_Identity=29.8319327731092, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43723; Mature: 43591

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQVLTISCKLKVSVSQAAKLDATLDAFAKALNCVNENTPEKIVNAVKLQSLCYREIRTR
CCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKSGFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEHEEEEEECCCEEEEEEEECC
RERFELDIGHYQRGLLAGSNPKAATLVKRQGGSYSIQIGVESEVPEPEHAVKAIGVDLGR
CCEEEEEHHHHHHCCCCCCCCCHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
RDIAHTSEGDNWNGQQLNQVRDHYSRLRGVLQRKASKGTRSTRRRCQQLLQRLSGRERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHH
QTWVNHCISKSIVARALATHRFIALEDLTGIRERVNRQPRSKTERRRANSWAFYQLRQFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH
HYKAMRAGVKVVVVSPAYSSQTCHQCLWIGQREGKHFRCVNPACGWEGDADLNGANGIAL
HHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
LGVAVNQPPSIPPPPCPRIRGVGGLEGGAVGAG
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQVLTISCKLKVSVSQAAKLDATLDAFAKALNCVNENTPEKIVNAVKLQSLCYREIRTR
CCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKSGFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEHEEEEEECCCEEEEEEEECC
RERFELDIGHYQRGLLAGSNPKAATLVKRQGGSYSIQIGVESEVPEPEHAVKAIGVDLGR
CCEEEEEHHHHHHCCCCCCCCCHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
RDIAHTSEGDNWNGQQLNQVRDHYSRLRGVLQRKASKGTRSTRRRCQQLLQRLSGRERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHH
QTWVNHCISKSIVARALATHRFIALEDLTGIRERVNRQPRSKTERRRANSWAFYQLRQFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH
HYKAMRAGVKVVVVSPAYSSQTCHQCLWIGQREGKHFRCVNPACGWEGDADLNGANGIAL
HHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
LGVAVNQPPSIPPPPCPRIRGVGGLEGGAVGAG
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]