Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86604819

Identifier: 86604819

GI number: 86604819

Start: 87209

End: 87829

Strand: Reverse

Name: 86604819

Synonym: CYA_0089

Alternate gene names: NA

Gene position: 87829-87209 (Counterclockwise)

Preceding gene: 86604820

Following gene: 86604818

Centisome position: 2.99

GC content: 61.84

Gene sequence:

>621_bases
ATGGCCTTGCTGCTCCCTAGGTCAGCGGCAAGTTGTGCCTATACTGATGTCTTTTGGGAGGTTTGGGTGTTGAGAGCAGT
GAAGCGTTCGTGGAGCCTCCGCTTGGCCCGGCTGGGGACGAGGCTGATTTTGGCAGGCTTGTTGGTAGGGGTGCTGTCCC
CTTCGGCAGCGGCGCAGTCGGGCCTGGTGATCACCGGCAGCGAAGGGGTACCTGTCCTCAGCTACCGGCTGGATTTTCGC
GGCATTCGCGGTCGGTTGGATCGCTATCGCCTGACGATCCCGCCTCAGAACGTGGCGGTGGCAGAGGTGCAGATCAACGG
GGATAGAAATTTCGATGCCGTCATCGACCCGGAGAACGTGCGCCTAGAGGTGGAGGGCAAGCCGGTGGAGCTGGCGGAAG
TGTACTGGAACGAGGAGTTTCGCTCTTTGGAGGTGGTGGCCCGTCAGCCCATTGCCGCCGGCCAGGAGATCCGCTTGGTG
CTCTCCAATGTGCGCAATCCTTCCGCTGCCGGCATCTACCGGGTAGAGGCGCGGGTACGGGGGACAGAGCCCAACCCCCT
CTTCCGCAATGTGGGCAACTGGCTCATCACCATCGACGATCCGGAGCGGCTCACTTTCTAA

Upstream 100 bases:

>100_bases
GGCGGGGAAAACTGCGCATCTCCGCACCCGCGTGGGCCTTGAGCGCTCTCGGTAGAAGGGATCCCACCCCTTACAATGGA
TAGCAATTTAATTTAATCTC

Downstream 100 bases:

>100_bases
GGGCAGCTCCCTTCGAGCGGGGGAGAGTTTTGAGAGTGGATCCCTGAACAGGGGGTTTCGGGCGTAGCCCTTTTCAGAGA
CAGGGCAAGGCTGGTGAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQSGLVITGSEGVPVLSYRLDFR
GIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENVRLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLV
LSNVRNPSAAGIYRVEARVRGTEPNPLFRNVGNWLITIDDPERLTF

Sequences:

>Translated_206_residues
MALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQSGLVITGSEGVPVLSYRLDFR
GIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENVRLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLV
LSNVRNPSAAGIYRVEARVRGTEPNPLFRNVGNWLITIDDPERLTF
>Mature_205_residues
ALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQSGLVITGSEGVPVLSYRLDFRG
IRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENVRLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLVL
SNVRNPSAAGIYRVEARVRGTEPNPLFRNVGNWLITIDDPERLTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22962; Mature: 22831

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQS
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
GLVITGSEGVPVLSYRLDFRGIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENV
CEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCCCE
RLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLVLSNVRNPSAAGIYRVEARVR
EEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE
GTEPNPLFRNVGNWLITIDDPERLTF
CCCCCHHHHCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
ALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQS
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
GLVITGSEGVPVLSYRLDFRGIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENV
CEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCCCE
RLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLVLSNVRNPSAAGIYRVEARVR
EEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE
GTEPNPLFRNVGNWLITIDDPERLTF
CCCCCHHHHCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA