| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86604819
Identifier: 86604819
GI number: 86604819
Start: 87209
End: 87829
Strand: Reverse
Name: 86604819
Synonym: CYA_0089
Alternate gene names: NA
Gene position: 87829-87209 (Counterclockwise)
Preceding gene: 86604820
Following gene: 86604818
Centisome position: 2.99
GC content: 61.84
Gene sequence:
>621_bases ATGGCCTTGCTGCTCCCTAGGTCAGCGGCAAGTTGTGCCTATACTGATGTCTTTTGGGAGGTTTGGGTGTTGAGAGCAGT GAAGCGTTCGTGGAGCCTCCGCTTGGCCCGGCTGGGGACGAGGCTGATTTTGGCAGGCTTGTTGGTAGGGGTGCTGTCCC CTTCGGCAGCGGCGCAGTCGGGCCTGGTGATCACCGGCAGCGAAGGGGTACCTGTCCTCAGCTACCGGCTGGATTTTCGC GGCATTCGCGGTCGGTTGGATCGCTATCGCCTGACGATCCCGCCTCAGAACGTGGCGGTGGCAGAGGTGCAGATCAACGG GGATAGAAATTTCGATGCCGTCATCGACCCGGAGAACGTGCGCCTAGAGGTGGAGGGCAAGCCGGTGGAGCTGGCGGAAG TGTACTGGAACGAGGAGTTTCGCTCTTTGGAGGTGGTGGCCCGTCAGCCCATTGCCGCCGGCCAGGAGATCCGCTTGGTG CTCTCCAATGTGCGCAATCCTTCCGCTGCCGGCATCTACCGGGTAGAGGCGCGGGTACGGGGGACAGAGCCCAACCCCCT CTTCCGCAATGTGGGCAACTGGCTCATCACCATCGACGATCCGGAGCGGCTCACTTTCTAA
Upstream 100 bases:
>100_bases GGCGGGGAAAACTGCGCATCTCCGCACCCGCGTGGGCCTTGAGCGCTCTCGGTAGAAGGGATCCCACCCCTTACAATGGA TAGCAATTTAATTTAATCTC
Downstream 100 bases:
>100_bases GGGCAGCTCCCTTCGAGCGGGGGAGAGTTTTGAGAGTGGATCCCTGAACAGGGGGTTTCGGGCGTAGCCCTTTTCAGAGA CAGGGCAAGGCTGGTGAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQSGLVITGSEGVPVLSYRLDFR GIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENVRLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLV LSNVRNPSAAGIYRVEARVRGTEPNPLFRNVGNWLITIDDPERLTF
Sequences:
>Translated_206_residues MALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQSGLVITGSEGVPVLSYRLDFR GIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENVRLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLV LSNVRNPSAAGIYRVEARVRGTEPNPLFRNVGNWLITIDDPERLTF >Mature_205_residues ALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQSGLVITGSEGVPVLSYRLDFRG IRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENVRLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLVL SNVRNPSAAGIYRVEARVRGTEPNPLFRNVGNWLITIDDPERLTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22962; Mature: 22831
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQS CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC GLVITGSEGVPVLSYRLDFRGIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENV CEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCCCE RLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLVLSNVRNPSAAGIYRVEARVR EEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE GTEPNPLFRNVGNWLITIDDPERLTF CCCCCHHHHCCCCEEEEECCCCCCCC >Mature Secondary Structure ALLLPRSAASCAYTDVFWEVWVLRAVKRSWSLRLARLGTRLILAGLLVGVLSPSAAAQS EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC GLVITGSEGVPVLSYRLDFRGIRGRLDRYRLTIPPQNVAVAEVQINGDRNFDAVIDPENV CEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCCCE RLEVEGKPVELAEVYWNEEFRSLEVVARQPIAAGQEIRLVLSNVRNPSAAGIYRVEARVR EEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE GTEPNPLFRNVGNWLITIDDPERLTF CCCCCHHHHCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA