Click here to switch to the map view.

The map label for this gene is ykgD [C]

Identifier: 86361197

GI number: 86361197

Start: 526765

End: 527682

Strand: Direct

Name: ykgD [C]

Synonym: RHE_PF00467

Alternate gene names: 86361197

Gene position: 526765-527682 (Clockwise)

Preceding gene: 86361195

Following gene: 86361200

Centisome position: 81.98

GC content: 62.53

Gene sequence:

>918_bases
ATGAGCGACCCTCTGGCCGAAATGGTCACGCTGCTGCAGCCGGCGGCGCGCTATTCGAAGCTCGTCAGTGGCGCAGGGAC
GTGGCGCGTTGAGCGCCAGGAGACGGGCCAGCCTTTCTACTGCGTCGTCCTGGAGGGTTATGCGCGGCTGAGCGCGGAGG
ACAAGCAGCTCACGCTGCGCGAAGGCGACTTCATCCTGATCCCGGCCGCCCATGCCTTCACGATGTCGAGCCTCGACGAC
GGATTGTCCCCCGGCATCGATCCCCTCACCGTCACCATGCTGCCTGTAGAAACGCGTCACGGCGATCCCGAAGGGGCTCC
GAATGCACGATTGCTGGTCGGCCACTTCGCTTTCGGCTCGCCCGATGCGACTTTGCTGGTTTCCCTGCTGCCGCGGATCA
TCCATATCCGCGGCGACAGCAGACTGTCGGCCATCGTTCAGCTCGTCACTGACGAAGCCCGCGCCGAGCGGCCGGGAAAG
AACATGATCCTGGCGCGGCTGCTGGAAGTATTGCTTGTCGAGGCGCTGCGCTCGAATGCTGGGGAGAAGGCGCCGCTTGG
AATTCTGCGTGGCCTAGGCGATCCACGCCTTGCTGTGGCTATCCGTCGGCTGCATGAAAATCCCTCCAAGGAATGGACGG
TGCAGCAGCTTGCCGGCGAGGCTGCCCTGTCGCGGTCGGCGTTTTTCAATCGCTTTCGTCGCGCTGTGGGCATAGCGCCG
ATGGAATATCTGATATCGTGGCGCATGGCGCTCGCCAAAAACCTGCTGAGCCAGGAGGATATCGGCATTCAGGAGATCGC
CGAACGCGTCGGCTATGGCTCCGCAAGCGCGTTCAGCACGGCATTTACGCGCTTTGCCGGATTGCCGCCCTCAAGATATG
CCGAGCAGTCAAAAACCATTTCAAACGCCGCCGCATGA

Upstream 100 bases:

>100_bases
TTCATATCTGTCTCCTATCCTTGCTGACAGCGATAGATGTAGACGGCGATGCCGCTACTGAATATCATGCATCGTCCTTG
TTTCATTATCAGGAGTATCG

Downstream 100 bases:

>100_bases
CGAGCGGCGTCAATGCCGCCCGTCCGGCAGCGGACAGGCTTCGCCGCAGCCGCCGACATCAGGCAGGTTATAGCGCAGGC
AGCAGACTTTGCGGCGAGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSDPLAEMVTLLQPAARYSKLVSGAGTWRVERQETGQPFYCVVLEGYARLSAEDKQLTLREGDFILIPAAHAFTMSSLDD
GLSPGIDPLTVTMLPVETRHGDPEGAPNARLLVGHFAFGSPDATLLVSLLPRIIHIRGDSRLSAIVQLVTDEARAERPGK
NMILARLLEVLLVEALRSNAGEKAPLGILRGLGDPRLAVAIRRLHENPSKEWTVQQLAGEAALSRSAFFNRFRRAVGIAP
MEYLISWRMALAKNLLSQEDIGIQEIAERVGYGSASAFSTAFTRFAGLPPSRYAEQSKTISNAAA

Sequences:

>Translated_305_residues
MSDPLAEMVTLLQPAARYSKLVSGAGTWRVERQETGQPFYCVVLEGYARLSAEDKQLTLREGDFILIPAAHAFTMSSLDD
GLSPGIDPLTVTMLPVETRHGDPEGAPNARLLVGHFAFGSPDATLLVSLLPRIIHIRGDSRLSAIVQLVTDEARAERPGK
NMILARLLEVLLVEALRSNAGEKAPLGILRGLGDPRLAVAIRRLHENPSKEWTVQQLAGEAALSRSAFFNRFRRAVGIAP
MEYLISWRMALAKNLLSQEDIGIQEIAERVGYGSASAFSTAFTRFAGLPPSRYAEQSKTISNAAA
>Mature_304_residues
SDPLAEMVTLLQPAARYSKLVSGAGTWRVERQETGQPFYCVVLEGYARLSAEDKQLTLREGDFILIPAAHAFTMSSLDDG
LSPGIDPLTVTMLPVETRHGDPEGAPNARLLVGHFAFGSPDATLLVSLLPRIIHIRGDSRLSAIVQLVTDEARAERPGKN
MILARLLEVLLVEALRSNAGEKAPLGILRGLGDPRLAVAIRRLHENPSKEWTVQQLAGEAALSRSAFFNRFRRAVGIAPM
EYLISWRMALAKNLLSQEDIGIQEIAERVGYGSASAFSTAFTRFAGLPPSRYAEQSKTISNAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=284, Percent_Identity=26.4084507042254, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082197, Length=90, Percent_Identity=34.4444444444444, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33173; Mature: 33041

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPLAEMVTLLQPAARYSKLVSGAGTWRVERQETGQPFYCVVLEGYARLSAEDKQLTLR
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECHHHCCCCCCEEEEE
EGDFILIPAAHAFTMSSLDDGLSPGIDPLTVTMLPVETRHGDPEGAPNARLLVGHFAFGS
CCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCC
PDATLLVSLLPRIIHIRGDSRLSAIVQLVTDEARAERPGKNMILARLLEVLLVEALRSNA
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GEKAPLGILRGLGDPRLAVAIRRLHENPSKEWTVQQLAGEAALSRSAFFNRFRRAVGIAP
CCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
MEYLISWRMALAKNLLSQEDIGIQEIAERVGYGSASAFSTAFTRFAGLPPSRYAEQSKTI
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
SNAAA
HHCCC
>Mature Secondary Structure 
SDPLAEMVTLLQPAARYSKLVSGAGTWRVERQETGQPFYCVVLEGYARLSAEDKQLTLR
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECHHHCCCCCCEEEEE
EGDFILIPAAHAFTMSSLDDGLSPGIDPLTVTMLPVETRHGDPEGAPNARLLVGHFAFGS
CCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCC
PDATLLVSLLPRIIHIRGDSRLSAIVQLVTDEARAERPGKNMILARLLEVLLVEALRSNA
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GEKAPLGILRGLGDPRLAVAIRRLHENPSKEWTVQQLAGEAALSRSAFFNRFRRAVGIAP
CCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
MEYLISWRMALAKNLLSQEDIGIQEIAERVGYGSASAFSTAFTRFAGLPPSRYAEQSKTI
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
SNAAA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]