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The map label for this gene is ycjR [C]

Identifier: 86361112

GI number: 86361112

Start: 430482

End: 431369

Strand: Reverse

Name: ycjR [C]

Synonym: RHE_PF00382

Alternate gene names: 86361112

Gene position: 431369-430482 (Counterclockwise)

Preceding gene: 86361114

Following gene: 86361111

Centisome position: 67.14

GC content: 60.59

Gene sequence:

>888_bases
ATGCATCTTTCGACACACAACTGGATGCGGGCCGAACCGCTCGCCGTCACGCTGAAGCGCATCAAGAAATACGGCTACGA
GAGCATCGAGATTTCGGGCGAGCCGGCTCAGTACGACGTCAAGGAGACGCGTGCGCTGCTGAAGGAGCACGGCATCCGCT
GCTGGGGCGCCGTTACACTGACCCTCGGCGAGCGAAATCTTGCTGCCAGGGATGAAGGCCAGCGCGCCAGGTCAGTGGAC
TATGTCAAGAGCGTCATCACCATGGTCAGCGAACTCGAGGGCGAGATCCTCACGCTCGTGCCGGCGACGGTCGGCAAGGT
CGTGCCGGATGGGACCGAGGAGGAAGAGTGGAGATGGGTGGTGGACGCCACCAGGGAGTGTTTTGCCCACGCTCAGAAGA
GGGGCGTGCGCATTGCCGTCGAGCCGCTCAACCGTTTCGAGACCTATTTCTTCAACCGTGCCGCCCAGGCGCTGGCGCTC
GCCGATGCCGTTAACCCCGAATGCGGGGTCTGCCTGGATGCGTTCCACCTGAACATCGAGGAGGAAGACATGTATGAGGC
GATCCGGCTTGCCGGTAAGCGCCTGTTCGATTTTCACATCGCCGATAACAATCGTTTCGCCGCTGGCCTCGGCCACCTCG
ACTGGCCGAAGATCATCGGCACGCTGAAGGAGGTCGGTTACGACGGTGCCGTCACCAACGAATTCGTCGCTCCGGTTGAC
CGAACGCCAGCCACCAAATATCCGGACATGGTCGAGCGCAACCCCGTCGACATCCCCCCGGAGCAGCTGAAATTTATCCA
GGACCACGGCTCGAGCCTCCTCACTGAGAAATTCTACGACGATCAGATGCGGATTACCGCCGAGACGATCCTGCCGCTAA
TTAAGTAA

Upstream 100 bases:

>100_bases
GGCCAAACCAGATTGCCAGGTAAACAAGCTGGTCAGGATAAGGGGATGTTTCGACGCCCAGTGGTTGTCGAGCGTGGCCG
CAACAGTCTAGGAGGACCCC

Downstream 100 bases:

>100_bases
CGAACTGAAGACATGTGCCCGCGGGCAGCGGCCCGCGGGCCGTGAGGAGGGGGATCCGGGACGTGCGTATCAAGACCGTC
GAGGCCTGGTGGGTCAAGAT

Product: putative epimerase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVKETRALLKEHGIRCWGAVTLTLGERNLAARDEGQRARSVD
YVKSVITMVSELEGEILTLVPATVGKVVPDGTEEEEWRWVVDATRECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALAL
ADAVNPECGVCLDAFHLNIEEEDMYEAIRLAGKRLFDFHIADNNRFAAGLGHLDWPKIIGTLKEVGYDGAVTNEFVAPVD
RTPATKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK

Sequences:

>Translated_295_residues
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVKETRALLKEHGIRCWGAVTLTLGERNLAARDEGQRARSVD
YVKSVITMVSELEGEILTLVPATVGKVVPDGTEEEEWRWVVDATRECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALAL
ADAVNPECGVCLDAFHLNIEEEDMYEAIRLAGKRLFDFHIADNNRFAAGLGHLDWPKIIGTLKEVGYDGAVTNEFVAPVD
RTPATKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK
>Mature_295_residues
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVKETRALLKEHGIRCWGAVTLTLGERNLAARDEGQRARSVD
YVKSVITMVSELEGEILTLVPATVGKVVPDGTEEEEWRWVVDATRECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALAL
ADAVNPECGVCLDAFHLNIEEEDMYEAIRLAGKRLFDFHIADNNRFAAGLGHLDWPKIIGTLKEVGYDGAVTNEFVAPVD
RTPATKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=260, Percent_Identity=26.5384615384615, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 33344; Mature: 33344

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVKETRALLKEHGIRCWGAVTL
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEE
TLGERNLAARDEGQRARSVDYVKSVITMVSELEGEILTLVPATVGKVVPDGTEEEEWRWV
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCHHHHHH
VDATRECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALALADAVNPECGVCLDAFHLNIE
HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHEECCCC
EEDMYEAIRLAGKRLFDFHIADNNRFAAGLGHLDWPKIIGTLKEVGYDGAVTNEFVAPVD
HHHHHHHHHHHCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCC
RTPATKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK
CCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHEEEHHHHHHHCC
>Mature Secondary Structure
MHLSTHNWMRAEPLAVTLKRIKKYGYESIEISGEPAQYDVKETRALLKEHGIRCWGAVTL
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEE
TLGERNLAARDEGQRARSVDYVKSVITMVSELEGEILTLVPATVGKVVPDGTEEEEWRWV
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCHHHHHH
VDATRECFAHAQKRGVRIAVEPLNRFETYFFNRAAQALALADAVNPECGVCLDAFHLNIE
HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHEECCCC
EEDMYEAIRLAGKRLFDFHIADNNRFAAGLGHLDWPKIIGTLKEVGYDGAVTNEFVAPVD
HHHHHHHHHHHCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCC
RTPATKYPDMVERNPVDIPPEQLKFIQDHGSSLLTEKFYDDQMRITAETILPLIK
CCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA