| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is 86360999
Identifier: 86360999
GI number: 86360999
Start: 292879
End: 293949
Strand: Direct
Name: 86360999
Synonym: RHE_PF00269
Alternate gene names: NA
Gene position: 292879-293949 (Clockwise)
Preceding gene: 86360998
Following gene: 86361000
Centisome position: 45.58
GC content: 61.25
Gene sequence:
>1071_bases ATGGCTATAGGGCGACCGCAGATACTTACGCACCGGGATATTTACGTGACCAGCTTCAAATCACTTCTTGCCGCATTTGG CCTCTCCGCCCTGATCGGTCTTGCCGCACCCCCATCTTACGCGGGGTCGACGGCCTACCCATTGACCTTCGAGAACTGCG GCACACAGGTCACGTTCAAGAAGGCGCCCGAGCGGGCGATCGGGCTCGGCCAGAACAGTGCGGAAATCCTGCTGCTGCTC GGCCTTCAGGACAAGATGGTCGGCACCGCCTTTTGGCCGAGCAAGGTGCTGCCGCAGCTCGCCGAGGCCAATGCCAAGGT CAAGCTCCTGACCGTGGAGATGCCGACCTTCGAATCCATGCTCGCCGAAAATCCCGATTTCGTGGCCGTCGCCCTGCCAA GCCTGGTCGGCCCGAACAGCAAGATCGCCAAGCGCGAGGATTTCGATAAGGTCGGTGTTTCAACCTATCTCTCGCCCAGC ACCTGCCTCAGCACCAAGAATGTCAAGGACCAGTACGGCAGCCGCGGCGAGCTGTGGAACATGGATCTCCTTTACAAGGA GATCGACGAACTCTCTCAGATTTTCGACGTCGCCGATCGCGGCCAGGCGCTGATCGCCGATTTCAAGGCACGGGAAGCCA AGCTTCGCGGGAGTGTTGCCAAGGACGGCCAAAACCTGTCCTACGTCTTCTGGTTCTCCAGCCCCAGCCCGTCGGCCGAT GCCTATGTCGGCGGCAAGAACAGCGCCTCCGGCTTCATCGCCGATCTGCTCGGCGGCCACAATGCGATCACCGCTGACGC CGAATGGCCGACTGTCGGTTGGGAAGGCATCATCGCCGCCAATCCCGATGTCATCGTCGTCGCCAGCCTCGATCGCAATC GCTGGGAGCTCGACAAGCCTGAGGCCAAGATCAACTTCCTGAACACCGACCCGGCCGTCAGTCAGATCCCGGCCGTCAAG AACAAGGCGCTCGTCGTGATGGACGGCCAGGCGATGAACCCGACCATCCGCACGATCTACGGCGCCGAGCAGGTTGCCGA GCAGCTGAAGGCGCTTGGTCTCCTGAAGTGA
Upstream 100 bases:
>100_bases GGGTGAAGGCCCAAAGCGCTCTCCATCCCGCTAGGAATGTCCCGTTCTGACGATTTCTGCGATAAGTTGATAAATTTGGT CTTGTTTCCGAGGCGCTCCT
Downstream 100 bases:
>100_bases CGGAAGCGGGCCGCCTCTTCCGGCAAGTGGGAGCGGTCACGGCACTGCTCCTGGCTTCCCTCTGCCTCATCGCGGTCGTC GTCGGCGTCAGCGTCGGCAT
Product: iron ABC transporter, substrate-binding protein
Products: NA
Alternate protein names: ABC Transporter; Iron Transport Lipoprotein; Iron ABC Transporter; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Iron Compound ABC Transporter
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MAIGRPQILTHRDIYVTSFKSLLAAFGLSALIGLAAPPSYAGSTAYPLTFENCGTQVTFKKAPERAIGLGQNSAEILLLL GLQDKMVGTAFWPSKVLPQLAEANAKVKLLTVEMPTFESMLAENPDFVAVALPSLVGPNSKIAKREDFDKVGVSTYLSPS TCLSTKNVKDQYGSRGELWNMDLLYKEIDELSQIFDVADRGQALIADFKAREAKLRGSVAKDGQNLSYVFWFSSPSPSAD AYVGGKNSASGFIADLLGGHNAITADAEWPTVGWEGIIAANPDVIVVASLDRNRWELDKPEAKINFLNTDPAVSQIPAVK NKALVVMDGQAMNPTIRTIYGAEQVAEQLKALGLLK
Sequences:
>Translated_356_residues MAIGRPQILTHRDIYVTSFKSLLAAFGLSALIGLAAPPSYAGSTAYPLTFENCGTQVTFKKAPERAIGLGQNSAEILLLL GLQDKMVGTAFWPSKVLPQLAEANAKVKLLTVEMPTFESMLAENPDFVAVALPSLVGPNSKIAKREDFDKVGVSTYLSPS TCLSTKNVKDQYGSRGELWNMDLLYKEIDELSQIFDVADRGQALIADFKAREAKLRGSVAKDGQNLSYVFWFSSPSPSAD AYVGGKNSASGFIADLLGGHNAITADAEWPTVGWEGIIAANPDVIVVASLDRNRWELDKPEAKINFLNTDPAVSQIPAVK NKALVVMDGQAMNPTIRTIYGAEQVAEQLKALGLLK >Mature_355_residues AIGRPQILTHRDIYVTSFKSLLAAFGLSALIGLAAPPSYAGSTAYPLTFENCGTQVTFKKAPERAIGLGQNSAEILLLLG LQDKMVGTAFWPSKVLPQLAEANAKVKLLTVEMPTFESMLAENPDFVAVALPSLVGPNSKIAKREDFDKVGVSTYLSPST CLSTKNVKDQYGSRGELWNMDLLYKEIDELSQIFDVADRGQALIADFKAREAKLRGSVAKDGQNLSYVFWFSSPSPSADA YVGGKNSASGFIADLLGGHNAITADAEWPTVGWEGIIAANPDVIVVASLDRNRWELDKPEAKINFLNTDPAVSQIPAVKN KALVVMDGQAMNPTIRTIYGAEQVAEQLKALGLLK
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38353; Mature: 38222
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIGRPQILTHRDIYVTSFKSLLAAFGLSALIGLAAPPSYAGSTAYPLTFENCGTQVTFK CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEC KAPERAIGLGQNSAEILLLLGLQDKMVGTAFWPSKVLPQLAEANAKVKLLTVEMPTFESM CCCCHHHCCCCCCCEEEEEEECCCHHCEEECCCHHHHHHHHCCCCEEEEEEEECCCHHHH LAENPDFVAVALPSLVGPNSKIAKREDFDKVGVSTYLSPSTCLSTKNVKDQYGSRGELWN HHCCCCEEEEEECHHCCCCCCCCCCCCHHHHCHHHCCCCHHHCCCCCCHHHCCCCCCEEC MDLLYKEIDELSQIFDVADRGQALIADFKAREAKLRGSVAKDGQNLSYVFWFSSPSPSAD HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHCCCCCEEEEEEECCCCCCCC AYVGGKNSASGFIADLLGGHNAITADAEWPTVGWEGIIAANPDVIVVASLDRNRWELDKP EEECCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCC EAKINFLNTDPAVSQIPAVKNKALVVMDGQAMNPTIRTIYGAEQVAEQLKALGLLK CCEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCHHHEEECHHHHHHHHHHHCCCC >Mature Secondary Structure AIGRPQILTHRDIYVTSFKSLLAAFGLSALIGLAAPPSYAGSTAYPLTFENCGTQVTFK CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEC KAPERAIGLGQNSAEILLLLGLQDKMVGTAFWPSKVLPQLAEANAKVKLLTVEMPTFESM CCCCHHHCCCCCCCEEEEEEECCCHHCEEECCCHHHHHHHHCCCCEEEEEEEECCCHHHH LAENPDFVAVALPSLVGPNSKIAKREDFDKVGVSTYLSPSTCLSTKNVKDQYGSRGELWN HHCCCCEEEEEECHHCCCCCCCCCCCCHHHHCHHHCCCCHHHCCCCCCHHHCCCCCCEEC MDLLYKEIDELSQIFDVADRGQALIADFKAREAKLRGSVAKDGQNLSYVFWFSSPSPSAD HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHCCCCCEEEEEEECCCCCCCC AYVGGKNSASGFIADLLGGHNAITADAEWPTVGWEGIIAANPDVIVVASLDRNRWELDKP EEECCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCC EAKINFLNTDPAVSQIPAVKNKALVVMDGQAMNPTIRTIYGAEQVAEQLKALGLLK CCEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCHHHEEECHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA