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The map label for this gene is dppAf

Identifier: 86360969

GI number: 86360969

Start: 254262

End: 255848

Strand: Direct

Name: dppAf

Synonym: RHE_PF00239

Alternate gene names: 86360969

Gene position: 254262-255848 (Clockwise)

Preceding gene: 86360968

Following gene: 86360970

Centisome position: 39.57

GC content: 61.5

Gene sequence:

>1587_bases
ATGCTGAAACAGCTATTGACGACAATCGCAGTTACCGGCGCCCTGATGGCCGCGCAGCCGAGCCTGGCGGCATCGCCGCC
CAATATGCTGGTGATTGGAACGAATCTGACCGGCATCCGCACGCTCGATCCGGCCCAGAACAATGCCCGCACGGTCTCCG
AGCTGATCTCGAACCTCTACGACAACCTCGTGCAACTGTCCCCGGACGATTTGAAGACGCTGAAGCCGATGCTGGCGACG
CAATGGAGCGTATCGGACGACGGCAAGATCATCACGCTGACCCTGCGCGACGATGCGGTCTTCCAGAGCGGCAACAAGGT
GACCGCCGAGGATGCGGCCTGGTCGATCCAGCGCGTCATCAAGATGGGTCAGGTCGGCTCCACGGACGTCGCGCTCTGGG
GCTTCACGGCCGATAATGTCGAAAAGCTGGTCCGCGCCAAGGACGAACACACGCTGGAGATCGAGCTGCCGCAGGCGGTG
AATACCGACCTTGTGCTCTATTCGCTGGCAGGCTCCTCGATCGGCATTGTCGACAAAAAGACGGTGCTGTCGCATGAGGC
GAACGGCGATTTCGGCGGCGCCTGGCTCTCGGCCAATTCCGCCGGCAGCGGTCCGTTCAGCCTGGCGCAATGGCGTCCGA
ACGACGTGGCGATCTTCAATGCCCAGCCAAAATATTGGGGCGGCAAGCCGGCCATGGCGCGTGTCGTCGCCCGCCACATC
CCGGAATCCGGCAATCTCCGGCTTCAGCTGGAGGCCGGCGACGTCGATGTCGGCCAGTACGTGGCGAGCGGCGATCTCGA
TGCCCTCTCCAGCAACAAGGATATGGTCATCGAGAACGTTCCGGGTCTTGGCTTCTATTATATCGCCCTCAACCAGAAAG
ATCCCGACCTGCAGAAGCCGAAGGTTCGCGAGGCCTTCCAGCATGCCTTCGACTGGAAGGCGATCTCCGGCAACATCATG
CGCTACACTGGTTTTCCCTGGCAGTCGATGATCCCGCGCGGGATGATCGGCGCTCCCGAAGCGGCTGATGTTCGCTATAA
CTACGATCCCGCCAAGGCGAAGCAGCTGCTGGTGGAGGCCGGCTATCCCAATGGCCTGAAGAAAGTGCTCAATCCCTCGG
GAGCACCAACCTTGCCCTTCGCGGAAGCGCTGCAGGCGAGCGCACGGGCCGCCGGCTTCGATCTCGATCTCGTGCCCGGC
GAATTCACGCCCGCCTTCCGCGAGCGCAAATTCGAAGTGCTGCTCGGCAATTCCGGCGCCCGCCTGCCCGATCCTTTCGC
CGTCGCCACGCAATATGCCTTCAATCCCGACAATAGCGACGAGGCACGCCTCGGCAGCTATTATCTCTGGCGTACCGGCA
TGAAGGTGGACGAGCTCAACACGCTCATCGATCAATCGATGAAGGAGCGCGACACGGGCAAACGCACCGATATCTTCAAG
AAGATGGACGGCATCTATGCCGGCATGGCTTCCCCGCTCGTCATCTTCTTCCAGCGAACCGACCCCTATGTCATGCGCGC
CAACGTGAAGGGCTATCACGGGCACACGACCTGGTCGACGCGCTGGCATGATGTGACCAAGGAGTAG

Upstream 100 bases:

>100_bases
GCAGCAGGACCGGCAGGCCGTGAAGGCTGCCGGCTGAGTTCGAACATTCTTCTGCAAGCAACCGGCGCGGGATGGCGCCA
CGAGATTGGGAGGTCTTGAG

Downstream 100 bases:

>100_bases
AGCGCGTGGCGAGCGCCGATCTGACATCGAAGCCGGATGGGAGCGGGTTCGCCGAGGCGGCTCCGCACCCTCTGCTGAGC
CTGCTGCGGCGGCTGGCGGG

Product: dipeptide ABC transporter, substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MLKQLLTTIAVTGALMAAQPSLAASPPNMLVIGTNLTGIRTLDPAQNNARTVSELISNLYDNLVQLSPDDLKTLKPMLAT
QWSVSDDGKIITLTLRDDAVFQSGNKVTAEDAAWSIQRVIKMGQVGSTDVALWGFTADNVEKLVRAKDEHTLEIELPQAV
NTDLVLYSLAGSSIGIVDKKTVLSHEANGDFGGAWLSANSAGSGPFSLAQWRPNDVAIFNAQPKYWGGKPAMARVVARHI
PESGNLRLQLEAGDVDVGQYVASGDLDALSSNKDMVIENVPGLGFYYIALNQKDPDLQKPKVREAFQHAFDWKAISGNIM
RYTGFPWQSMIPRGMIGAPEAADVRYNYDPAKAKQLLVEAGYPNGLKKVLNPSGAPTLPFAEALQASARAAGFDLDLVPG
EFTPAFRERKFEVLLGNSGARLPDPFAVATQYAFNPDNSDEARLGSYYLWRTGMKVDELNTLIDQSMKERDTGKRTDIFK
KMDGIYAGMASPLVIFFQRTDPYVMRANVKGYHGHTTWSTRWHDVTKE

Sequences:

>Translated_528_residues
MLKQLLTTIAVTGALMAAQPSLAASPPNMLVIGTNLTGIRTLDPAQNNARTVSELISNLYDNLVQLSPDDLKTLKPMLAT
QWSVSDDGKIITLTLRDDAVFQSGNKVTAEDAAWSIQRVIKMGQVGSTDVALWGFTADNVEKLVRAKDEHTLEIELPQAV
NTDLVLYSLAGSSIGIVDKKTVLSHEANGDFGGAWLSANSAGSGPFSLAQWRPNDVAIFNAQPKYWGGKPAMARVVARHI
PESGNLRLQLEAGDVDVGQYVASGDLDALSSNKDMVIENVPGLGFYYIALNQKDPDLQKPKVREAFQHAFDWKAISGNIM
RYTGFPWQSMIPRGMIGAPEAADVRYNYDPAKAKQLLVEAGYPNGLKKVLNPSGAPTLPFAEALQASARAAGFDLDLVPG
EFTPAFRERKFEVLLGNSGARLPDPFAVATQYAFNPDNSDEARLGSYYLWRTGMKVDELNTLIDQSMKERDTGKRTDIFK
KMDGIYAGMASPLVIFFQRTDPYVMRANVKGYHGHTTWSTRWHDVTKE
>Mature_528_residues
MLKQLLTTIAVTGALMAAQPSLAASPPNMLVIGTNLTGIRTLDPAQNNARTVSELISNLYDNLVQLSPDDLKTLKPMLAT
QWSVSDDGKIITLTLRDDAVFQSGNKVTAEDAAWSIQRVIKMGQVGSTDVALWGFTADNVEKLVRAKDEHTLEIELPQAV
NTDLVLYSLAGSSIGIVDKKTVLSHEANGDFGGAWLSANSAGSGPFSLAQWRPNDVAIFNAQPKYWGGKPAMARVVARHI
PESGNLRLQLEAGDVDVGQYVASGDLDALSSNKDMVIENVPGLGFYYIALNQKDPDLQKPKVREAFQHAFDWKAISGNIM
RYTGFPWQSMIPRGMIGAPEAADVRYNYDPAKAKQLLVEAGYPNGLKKVLNPSGAPTLPFAEALQASARAAGFDLDLVPG
EFTPAFRERKFEVLLGNSGARLPDPFAVATQYAFNPDNSDEARLGSYYLWRTGMKVDELNTLIDQSMKERDTGKRTDIFK
KMDGIYAGMASPLVIFFQRTDPYVMRANVKGYHGHTTWSTRWHDVTKE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=501, Percent_Identity=30.1397205588822, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1787551, Length=411, Percent_Identity=26.5206812652068, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1789966, Length=480, Percent_Identity=26.25, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787052, Length=367, Percent_Identity=25.6130790190736, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1789887, Length=398, Percent_Identity=26.6331658291457, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787495, Length=401, Percent_Identity=26.1845386533666, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081878, Length=389, Percent_Identity=26.9922879177378, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789397, Length=329, Percent_Identity=23.7082066869301, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57804; Mature: 57804

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQLLTTIAVTGALMAAQPSLAASPPNMLVIGTNLTGIRTLDPAQNNARTVSELISNLY
CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
DNLVQLSPDDLKTLKPMLATQWSVSDDGKIITLTLRDDAVFQSGNKVTAEDAAWSIQRVI
HHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHCCCCEEEHHHHHHHHHHHH
KMGQVGSTDVALWGFTADNVEKLVRAKDEHTLEIELPQAVNTDLVLYSLAGSSIGIVDKK
HHCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEECH
TVLSHEANGDFGGAWLSANSAGSGPFSLAQWRPNDVAIFNAQPKYWGGKPAMARVVARHI
HHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHC
PESGNLRLQLEAGDVDVGQYVASGDLDALSSNKDMVIENVPGLGFYYIALNQKDPDLQKP
CCCCCEEEEEECCCCCHHHEEECCCCHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCC
KVREAFQHAFDWKAISGNIMRYTGFPWQSMIPRGMIGAPEAADVRYNYDPAKAKQLLVEA
HHHHHHHHHCCCEEECCCEEEEECCCHHHHCCCCCCCCCCCCCEEECCCHHHHHHHEEEC
GYPNGLKKVLNPSGAPTLPFAEALQASARAAGFDLDLVPGEFTPAFRERKFEVLLGNSGA
CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHCCEEEEEECCCCC
RLPDPFAVATQYAFNPDNSDEARLGSYYLWRTGMKVDELNTLIDQSMKERDTGKRTDIFK
CCCCCHHHHEEEEECCCCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHH
KMDGIYAGMASPLVIFFQRTDPYVMRANVKGYHGHTTWSTRWHDVTKE
HHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKQLLTTIAVTGALMAAQPSLAASPPNMLVIGTNLTGIRTLDPAQNNARTVSELISNLY
CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
DNLVQLSPDDLKTLKPMLATQWSVSDDGKIITLTLRDDAVFQSGNKVTAEDAAWSIQRVI
HHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHCCCCEEEHHHHHHHHHHHH
KMGQVGSTDVALWGFTADNVEKLVRAKDEHTLEIELPQAVNTDLVLYSLAGSSIGIVDKK
HHCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEECH
TVLSHEANGDFGGAWLSANSAGSGPFSLAQWRPNDVAIFNAQPKYWGGKPAMARVVARHI
HHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHC
PESGNLRLQLEAGDVDVGQYVASGDLDALSSNKDMVIENVPGLGFYYIALNQKDPDLQKP
CCCCCEEEEEECCCCCHHHEEECCCCHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCC
KVREAFQHAFDWKAISGNIMRYTGFPWQSMIPRGMIGAPEAADVRYNYDPAKAKQLLVEA
HHHHHHHHHCCCEEECCCEEEEECCCHHHHCCCCCCCCCCCCCEEECCCHHHHHHHEEEC
GYPNGLKKVLNPSGAPTLPFAEALQASARAAGFDLDLVPGEFTPAFRERKFEVLLGNSGA
CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHCCEEEEEECCCCC
RLPDPFAVATQYAFNPDNSDEARLGSYYLWRTGMKVDELNTLIDQSMKERDTGKRTDIFK
CCCCCHHHHEEEEECCCCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHH
KMDGIYAGMASPLVIFFQRTDPYVMRANVKGYHGHTTWSTRWHDVTKE
HHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]