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The map label for this gene is nolRf

Identifier: 86360956

GI number: 86360956

Start: 240133

End: 240486

Strand: Direct

Name: nolRf

Synonym: RHE_PF00226

Alternate gene names: 86360956

Gene position: 240133-240486 (Clockwise)

Preceding gene: 86360955

Following gene: 86360957

Centisome position: 37.37

GC content: 53.95

Gene sequence:

>354_bases
TTGAACAATCAATCGTCAGTCGCGCCTTCCCCTAAAACCAATGCCTTCGACAACGAAGCAAACTTCCTGTCGGCTATGGG
GAATTCCAAACGGCTTCACATTCTGCATCTGTTGACCGAAGGAGAAATGTCCGTAACCGTCCTGGCTGACGAAGTGGGAT
TGAGCCAATCTTCGACGTCTCAGCATCTGGCAATTCTTCGAGAACAGGAACTCGTGCAGACGCGAAGGGCTGCGCAGACG
ATCTACTATTCACTTCAATCGGACGGGGTCAGGGCAATGCTCGATACGCTCGCGGACATTTTCGGATCGCATCGCCGTAC
GGCGGCTGAACCTACCCGAGCCGTGGGCACCTAA

Upstream 100 bases:

>100_bases
CGGCAATGGGTTTCGGCTCCGCACGCTTGCGTTATCTCTAAATTAAAGTTCGGGGATATGACATCGTACCCGGCTTTGGT
TCCCCAAAGGAGATCTCGCC

Downstream 100 bases:

>100_bases
CGCCAATGGCGGAACGCTGATGCTGCCGCTCATGATTGGTCTCCAATTCTGCTGACATGCCCCTCGACCACATCGAGCGC
TGATGTACGTTTGATGTACG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNNQSSVAPSPKTNAFDNEANFLSAMGNSKRLHILHLLTEGEMSVTVLADEVGLSQSSTSQHLAILREQELVQTRRAAQT
IYYSLQSDGVRAMLDTLADIFGSHRRTAAEPTRAVGT

Sequences:

>Translated_117_residues
MNNQSSVAPSPKTNAFDNEANFLSAMGNSKRLHILHLLTEGEMSVTVLADEVGLSQSSTSQHLAILREQELVQTRRAAQT
IYYSLQSDGVRAMLDTLADIFGSHRRTAAEPTRAVGT
>Mature_117_residues
MNNQSSVAPSPKTNAFDNEANFLSAMGNSKRLHILHLLTEGEMSVTVLADEVGLSQSSTSQHLAILREQELVQTRRAAQT
IYYSLQSDGVRAMLDTLADIFGSHRRTAAEPTRAVGT

Specific function: Negative transacting factor controlling the nod regulon. May control the expression of nodD1, nodD2, nodD3 and nodABC genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 12744; Mature: 12744

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNQSSVAPSPKTNAFDNEANFLSAMGNSKRLHILHLLTEGEMSVTVLADEVGLSQSSTS
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCH
QHLAILREQELVQTRRAAQTIYYSLQSDGVRAMLDTLADIFGSHRRTAAEPTRAVGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNNQSSVAPSPKTNAFDNEANFLSAMGNSKRLHILHLLTEGEMSVTVLADEVGLSQSSTS
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCH
QHLAILREQELVQTRRAAQTIYYSLQSDGVRAMLDTLADIFGSHRRTAAEPTRAVGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840615 [H]