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The map label for this gene is nodW [H]

Identifier: 86360955

GI number: 86360955

Start: 239257

End: 239949

Strand: Direct

Name: nodW [H]

Synonym: RHE_PF00225

Alternate gene names: 86360955

Gene position: 239257-239949 (Clockwise)

Preceding gene: 86360954

Following gene: 86360956

Centisome position: 37.24

GC content: 62.48

Gene sequence:

>693_bases
ATGAGGGTTGACCAGCCGTTCGTTCGTAGATCGGCGCCTTTGTCAGCGCAGCGTGAACGTGAAGAGGATCAGCCGCTCGT
CATGATCGTGGACGACGACGCATCCGTTCGCGAGGCGCTGTCGGAGCTGATCCTGTCGGCCGGTTTTCAGCCGGTCAGCT
TCGCTTCGACCCGCGAACTGCTCGACGCGGATATATTGGACAGACCCGGCTGCCTGATCCTCGATGTGCGCATGCCGGGG
GCAAGCGGCCTCCACCTGCAGAGCCATCTGGCCGAGAACGGCATTGCCAAGCCGATCATCTTCCTGACCGGCCATGGCGA
TATCCCGATGACTGTCCAGGCGATGAAAGCCGGCGCCGTGGATTTCCTCACCAAGCCGGCGCGGGATCAGACGCTGCTCG
ATGCCGTGACAGCAGCCATCGTCATGGACGGCGAACGACGAGCGGAAGCGGCGATCGCCAATCGCAATATCGAACGGCTG
GAGACGCTGACGCAGCGCGAGCGCGAAGTTCTGCACCAAGTGGCACGCGGGCGCCTCAACAAGCAGATCGCCTTCGACCT
TGGCATCAGCGAAGTGACCGTCAAGCTACATCGCAGCAATGTCATGCACAAGATGCAGGCCGCCTCGATCGGCGAACTGA
TCCGGGCCTGGGAAACATTGCCGGCGCAGATGCGTCAGGCTGGGGCGCGATAG

Upstream 100 bases:

>100_bases
GCTCAAGGCGCCGGCGGATTCTTCCGCAAGCCATTCGATGCCCAGGCCCTGATCGCGGCCATCGCCAATGCCTTACACAA
ATCGAGAGATGGAGGGTGAC

Downstream 100 bases:

>100_bases
CGTCTAATCAAGGAGCCAAGAGCGCCGGCTGTCCATTTGATGCACGCCGTATCCGATTCACGCCAAAAAAGACGATGCGG
CGCCGGCAATGGGTTTCGGC

Product: two-component response regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRVDQPFVRRSAPLSAQREREEDQPLVMIVDDDASVREALSELILSAGFQPVSFASTRELLDADILDRPGCLILDVRMPG
ASGLHLQSHLAENGIAKPIIFLTGHGDIPMTVQAMKAGAVDFLTKPARDQTLLDAVTAAIVMDGERRAEAAIANRNIERL
ETLTQREREVLHQVARGRLNKQIAFDLGISEVTVKLHRSNVMHKMQAASIGELIRAWETLPAQMRQAGAR

Sequences:

>Translated_230_residues
MRVDQPFVRRSAPLSAQREREEDQPLVMIVDDDASVREALSELILSAGFQPVSFASTRELLDADILDRPGCLILDVRMPG
ASGLHLQSHLAENGIAKPIIFLTGHGDIPMTVQAMKAGAVDFLTKPARDQTLLDAVTAAIVMDGERRAEAAIANRNIERL
ETLTQREREVLHQVARGRLNKQIAFDLGISEVTVKLHRSNVMHKMQAASIGELIRAWETLPAQMRQAGAR
>Mature_230_residues
MRVDQPFVRRSAPLSAQREREEDQPLVMIVDDDASVREALSELILSAGFQPVSFASTRELLDADILDRPGCLILDVRMPG
ASGLHLQSHLAENGIAKPIIFLTGHGDIPMTVQAMKAGAVDFLTKPARDQTLLDAVTAAIVMDGERRAEAAIANRNIERL
ETLTQREREVLHQVARGRLNKQIAFDLGISEVTVKLHRSNVMHKMQAASIGELIRAWETLPAQMRQAGAR

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=34.3434343434343, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1790299, Length=101, Percent_Identity=36.6336633663366, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=33.5, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786599, Length=116, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788222, Length=194, Percent_Identity=28.3505154639175, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25371; Mature: 25371

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDQPFVRRSAPLSAQREREEDQPLVMIVDDDASVREALSELILSAGFQPVSFASTREL
CCCCCCHHHHCCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDADILDRPGCLILDVRMPGASGLHLQSHLAENGIAKPIIFLTGHGDIPMTVQAMKAGAV
HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCH
DFLTKPARDQTLLDAVTAAIVMDGERRAEAAIANRNIERLETLTQREREVLHQVARGRLN
HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
KQIAFDLGISEVTVKLHRSNVMHKMQAASIGELIRAWETLPAQMRQAGAR
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVDQPFVRRSAPLSAQREREEDQPLVMIVDDDASVREALSELILSAGFQPVSFASTREL
CCCCCCHHHHCCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDADILDRPGCLILDVRMPGASGLHLQSHLAENGIAKPIIFLTGHGDIPMTVQAMKAGAV
HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCH
DFLTKPARDQTLLDAVTAAIVMDGERRAEAAIANRNIERLETLTQREREVLHQVARGRLN
HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
KQIAFDLGISEVTVKLHRSNVMHKMQAASIGELIRAWETLPAQMRQAGAR
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]