| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is hcp [H]
Identifier: 85860676
GI number: 85860676
Start: 2852615
End: 2854243
Strand: Direct
Name: hcp [H]
Synonym: SYN_02993
Alternate gene names: 85860676
Gene position: 2852615-2854243 (Clockwise)
Preceding gene: 85860673
Following gene: 85860677
Centisome position: 89.72
GC content: 59.18
Gene sequence:
>1629_bases ATGTTTTGTTTTCAATGTGAGCAGACGGCAGGTGGAACAGGATGCACGAAAGGCGGCGTATGCGGGAAAACGCCGGAAGT GGCGGCTCTGCAGGATCTTCTGATCTACGAGCTGAAGGGGCTGTCCCTGGGCGCCCTCGAAGCGGACAAAGTCGGTATCC ACGACGAGGAAGTCGACCGCTTTACGGTTGAAGCGCTCTTTTCCACCCTGACCAATGTGGATTTCGATCCCGACCGTTTC GTCGTTCTTCTGAACCAGGGTGTGAAGCTTCGCGAACAGCTCAGGGAAAAAGTGAAAAAAGCCGGAGGAAAGGCTGACAT CGCCGACGAGTCAGCGCTTTTCCAGCCTGCGGCGACGCTGGAGGGCCTGGTCGCCCAGGGCGATAAAGTGGGCATCAAAT CCGATCATCAGGCCGATCCCGATGTGCTGGCCCTGAAGGAACTCCTCATCTACGGCATCAAGGGGGGCGCGGCCTACGCC GATCATGCCCGCATCCTCGGGAAAACCGATGCGGCAATAACGCGGTTTCTCTACGAAGCCCTGGCCGCTACGCGCAATGC AGCACTGGGAGTCAACGATCTGGTTTCCCTCGTGCTGAAATGCGGGGAGATCAACCTCAAGACCATGGAACTCCTCGACG CCGCCCACACGGAAGCCTATGGACACCCCGTTCCCACCGCCGTTCCCCTGGGGGCAAAGAAAGGGAAAGCCATCCTCGTT TCCGGACACGATCTCAAGGATCTGGATGAACTCCTGCAACAGACCGCCGGAAAGGGGATCAACGTCTACACCCATGGAGA GATGCTCCCCACTCACGGTTATCCGGGGCTGAAGAAGCATCCCCATTTCTACGGCCATTACGGGACGGCCTGGCAGAACC AGAAAAAGGAATTTGCCGCCTTCCCGGGCGCCATCCTCATGACGACCAACTGCATCCAGAAACCCGCGGAGTCCTACCAG GACAACATCTTCACCGCCGGACTCGTGGGATGGCCGGGGGTCACCCATATCGCCGACCGGAACTTCACTCCCGTAATCGA GAAAGCCCTGGCCCTGCACGGATTTCCGGAAGATGTTCCCGGGAAATCGGTATTAGTCGGTTTCGGCAGGAATGCCGTTC TCGGCGTGGCCGACAAGGTCATCGAAGGCGTGAAGAGCAAGGCCATCCGCCATTTCTTCCTGGTTGCGGGCTGCGACGGC GCCAAGCCGGGACGGAACTACTACACGGAGTTCGTGGAAAAGGTTCCGAAGGACTGCGTGGTCCTTACCCTGGCCTGCGG AAAATTCCGCTTCTTCGACAAGGATCTGGGAGACATCGGCGGCATTCCCCGGCTGCTCGACATCGGCCAGTGCAATGACG CCTACTCGGCCATCGCCATCGCCGGGGCGCTCGCCAACGCCTTCGGCTGCGGGGTGAACGACCTGCCCCTGTCCATGGTT CTCTCCTGGTACGAGCAGAAGGCCGTGGCCATCCTCCTGACCCTGCTCCATCTTGGAATTCGGGATATCCGGCTGGGGCC CAGTCTTCCGGCCTTCGTCACCCCCAACATCCTGAACGTCCTGGTGCAGAACTTCAACATCATGCCCATATCGACACCTG ACGAGGATCTGAAAGCGATCCTCGGTTAA
Upstream 100 bases:
>100_bases CATTATGAGGTAATGGCCCCAGAAATCAAGGGGGCTTTCAGGAAGTTTTTCCCCCATGACAAAAAAATTCACGATCCCGG CAGGGAAAAGGAGGAAGAAC
Downstream 100 bases:
>100_bases AGAGAAAGGAGATTGTCATGGAAGGAGAGAAAAAAGAAAAAGAGAAGGGAATCCCCTTCAACCTGGATGCCGAGGTCGCT TACGCGGACGGATCCATCGT
Product: hydroxylamine reductase
Products: NA
Alternate protein names: Hybrid-cluster protein; HCP [H]
Number of amino acids: Translated: 542; Mature: 542
Protein sequence:
>542_residues MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDRFTVEALFSTLTNVDFDPDRF VVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATLEGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYA DHARILGKTDAAITRFLYEALAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAAFPGAILMTTNCIQKPAESYQ DNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVPGKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDG AKPGRNYYTEFVEKVPKDCVVLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAILG
Sequences:
>Translated_542_residues MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDRFTVEALFSTLTNVDFDPDRF VVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATLEGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYA DHARILGKTDAAITRFLYEALAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAAFPGAILMTTNCIQKPAESYQ DNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVPGKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDG AKPGRNYYTEFVEKVPKDCVVLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAILG >Mature_542_residues MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDRFTVEALFSTLTNVDFDPDRF VVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATLEGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYA DHARILGKTDAAITRFLYEALAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAAFPGAILMTTNCIQKPAESYQ DNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVPGKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDG AKPGRNYYTEFVEKVPKDCVVLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAILG
Specific function: Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O [H]
COG id: COG1151
COG function: function code C; 6Fe-6S prismane cluster-containing protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HCP family [H]
Homologues:
Organism=Escherichia coli, GI87081794, Length=548, Percent_Identity=48.7226277372263, Blast_Score=523, Evalue=1e-149,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010048 - InterPro: IPR004137 - InterPro: IPR011254 - InterPro: IPR016099 - InterPro: IPR016100 [H]
Pfam domain/function: PF03063 Prismane [H]
EC number: NA
Molecular weight: Translated: 58128; Mature: 58128
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDR CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH FTVEALFSTLTNVDFDPDRFVVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATL HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHH EGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYADHARILGKTDAAITRFLYEA HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHH LAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAA ECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHH FPGAILMTTNCIQKPAESYQDNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVP CCCHHEEEHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCC GKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDGAKPGRNYYTEFVEKVPKDCV CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCEE VLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV EEEEECCCEEEHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAI HHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHH LG CC >Mature Secondary Structure MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDR CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH FTVEALFSTLTNVDFDPDRFVVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATL HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHH EGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYADHARILGKTDAAITRFLYEA HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHH LAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAA ECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHH FPGAILMTTNCIQKPAESYQDNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVP CCCHHEEEHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCC GKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDGAKPGRNYYTEFVEKVPKDCV CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCEE VLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV EEEEECCCEEEHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAI HHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHH LG CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA