| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is pyrE [H]
Identifier: 85860423
GI number: 85860423
Start: 2590681
End: 2591271
Strand: Direct
Name: pyrE [H]
Synonym: SYN_02702
Alternate gene names: 85860423
Gene position: 2590681-2591271 (Clockwise)
Preceding gene: 85860422
Following gene: 85860424
Centisome position: 81.49
GC content: 61.42
Gene sequence:
>591_bases ATGACAACTCAGGAAGCCAGAAAGCAGCGTCTCATTGAAATCATCCTGGAGAAATCCTTCAAATACAGTGAAGATCCGCC CTTTACGCTGGCCTCGGGAAGAACGAGCCCTTACTATTTCAACTGCAAGCCAACGACCCTGAATCCGGAAGGGATGAACC TCATCGGCAGCCTGCTGGCGGATATGCTGGCCGACGCGGACGTGACAGCCGCCGGAGGGCTTACCCTGGGAGCCGATCCG CTGGCCAACGCCCTGGCCGTCATCTCCTGGCAGAAGGGGAAGCCCATCAAGGCCTTCATCGTCCGCAAGGATGTCAAGGG GCACGGGACCAGGAGCGCCCTGGAAGGTGACGTGCAGCCGGGCGAGCGGGTCGTCATTCTCGATGACGTCATCACCACGG GAGGCTCCACGATCACCGCCATCGAGCGCGCACGGGAGGCCGGACTGGTCATCGACAGGGTGATTGCCCTGATCGACCGG GAAGAAGGCGGCCGCGCCAACATCGAAGCCCATGTCCCCCGCGTCGACGCCGTCCTGACCCGGTCGGAGATCATGAATCA CTTTTCAGGCAAAGCCCCGATCGCGTCCTGA
Upstream 100 bases:
>100_bases GGCGCTTCGATTTACTATCTCAGCGAATGCGCCCTTTTTCCGGACGCCCCGCTATCCTGTCGAATGCGGCCCGATGTAAA TTTATTCAAGGAGGTAAATC
Downstream 100 bases:
>100_bases TCCGGCGCGGCTTATACCGGAAAATCAGGACACCTGATACCAGTTCCGGATCAGATCAGAAAGGATATCCATGCGGCAAG ACAGAAGCGACGCGGACCAG
Product: orotate phosphoribosyltransferase
Products: NA
Alternate protein names: OPRT; OPRTase [H]
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MTTQEARKQRLIEIILEKSFKYSEDPPFTLASGRTSPYYFNCKPTTLNPEGMNLIGSLLADMLADADVTAAGGLTLGADP LANALAVISWQKGKPIKAFIVRKDVKGHGTRSALEGDVQPGERVVILDDVITTGGSTITAIERAREAGLVIDRVIALIDR EEGGRANIEAHVPRVDAVLTRSEIMNHFSGKAPIAS
Sequences:
>Translated_196_residues MTTQEARKQRLIEIILEKSFKYSEDPPFTLASGRTSPYYFNCKPTTLNPEGMNLIGSLLADMLADADVTAAGGLTLGADP LANALAVISWQKGKPIKAFIVRKDVKGHGTRSALEGDVQPGERVVILDDVITTGGSTITAIERAREAGLVIDRVIALIDR EEGGRANIEAHVPRVDAVLTRSEIMNHFSGKAPIAS >Mature_195_residues TTQEARKQRLIEIILEKSFKYSEDPPFTLASGRTSPYYFNCKPTTLNPEGMNLIGSLLADMLADADVTAAGGLTLGADPL ANALAVISWQKGKPIKAFIVRKDVKGHGTRSALEGDVQPGERVVILDDVITTGGSTITAIERAREAGLVIDRVIALIDRE EGGRANIEAHVPRVDAVLTRSEIMNHFSGKAPIAS
Specific function: Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) [H]
COG id: COG0461
COG function: function code F; Orotate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily [H]
Homologues:
Organism=Homo sapiens, GI4507835, Length=170, Percent_Identity=30, Blast_Score=90, Evalue=1e-18, Organism=Escherichia coli, GI1790073, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17554964, Length=167, Percent_Identity=34.1317365269461, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17508631, Length=161, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI17933654, Length=197, Percent_Identity=29.9492385786802, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004467 - InterPro: IPR023031 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.4.2.10 [H]
Molecular weight: Translated: 21052; Mature: 20921
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: PS00103 PUR_PYR_PR_TRANSFER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQEARKQRLIEIILEKSFKYSEDPPFTLASGRTSPYYFNCKPTTLNPEGMNLIGSLLA CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHH DMLADADVTAAGGLTLGADPLANALAVISWQKGKPIKAFIVRKDVKGHGTRSALEGDVQP HHHCCCCCCCCCCCEECCCHHHHHHEEEEECCCCCEEEEEEEECCCCCCCCHHHCCCCCC GERVVILDDVITTGGSTITAIERAREAGLVIDRVIALIDREEGGRANIEAHVPRVDAVLT CCEEEEEECHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHH RSEIMNHFSGKAPIAS HHHHHHHHCCCCCCCC >Mature Secondary Structure TTQEARKQRLIEIILEKSFKYSEDPPFTLASGRTSPYYFNCKPTTLNPEGMNLIGSLLA CCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHH DMLADADVTAAGGLTLGADPLANALAVISWQKGKPIKAFIVRKDVKGHGTRSALEGDVQP HHHCCCCCCCCCCCEECCCHHHHHHEEEEECCCCCEEEEEEEECCCCCCCCHHHCCCCCC GERVVILDDVITTGGSTITAIERAREAGLVIDRVIALIDREEGGRANIEAHVPRVDAVLT CCEEEEEECHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHH RSEIMNHFSGKAPIAS HHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA