| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is hypF2 [H]
Identifier: 85860208
GI number: 85860208
Start: 2405341
End: 2407677
Strand: Direct
Name: hypF2 [H]
Synonym: SYN_00600
Alternate gene names: 85860208
Gene position: 2405341-2407677 (Clockwise)
Preceding gene: 85860207
Following gene: 85860209
Centisome position: 75.66
GC content: 60.03
Gene sequence:
>2337_bases ATGGCTTGCCGGACAGATCGAGGCCTTTCGCAATTCATGAGCAGAAAGATAAGGCGCGTCCGCTGCCTTTTCACCGGCAT CGTCCAGGGAGTGGGATTCCGCCCTTATATTTATAGAATGGCGACCAACTACAGTCTCGGCGGCTTTGTGTGCAACATCC CGGAAGGGGTGGTTGCCGAGGTCGAGGGAACTGCTCCGCAGATTGAAGCGTTCCTCTCCGCAGTCCCGAAAGAGCTCCCT CCCGCGGCCGCCTTGACTGCGCTGTCAAACACGGATGTCTCCCTTCTGGGAGAAACCGAATTCCAGATCATCAGCAGCAG GGCGGAGGGCAATAAAGCCGTCCTCATTGCCCCCGATATTGCCGTCTGCGAAAACTGCCTGCGGGAATTCCGGGACCCCG GGGATCGCCGGTATCGCTATCCCTTCATCAACTGCACGGACTGCGGCCCCCGCCTGACCATCATCCGGGATGTCCCCTAC GACCGGGAAAAGACCTCCATGGCCTGTTTCCCCCTTTGTCCACAGTGCCGCGCAGAGTATGAAAATCCCGCAAACCGCCG GTTCCATGCCGAACCCAATGCCTGCCCTTCCTGCGGACCGAAACTCTGGCTCACCGATGAAAACGGGACCCCTTTTTCGG ACGATTTCAACGATCCCATCGCGAAGGCGATTGAACTGTTGAGCAAGGGGAAAATCCTGGCCGTAAAGGGACTCGGTGGT TTTCATCTTGCAGTGGATGCGACAGACGAGGGGGCCGTCAGGCGCCTGCGCAGCAGGAAATACCGTGAGGAAAAGCCGCT GGCCGTGATGGTGCGTGACCTTGAAGCGGCTTCGAAAATCGCTGAAATCGGCGACAGGGAGCGGAAGCTCCTTTTTTCTC CGCAGCGCCCCATTGTCCTCTGCCGCAAGCGAGGGGCAAAGGAAATCGCACCCTCCGTAGCGCCGGGGGTTCCTGACCGG GGCATCATGCTGCCTTACACGCCCCTGCATTATCTGCTTCTGGAAAATACGCTCTCCGCCCTCGTGATGACCAGCGCCAA TCAGAGCGACGAGCCCATCTGCATCGGGAACCGCGAAGCCCTGAAACGCCTGAAAGGGATTGCCGACGCCTATCTCTTGC ACAACAGGGACATCCTGGTACGCTGCGATGACTCCGTGGCGACCGTCACTCAAGGGAAGACCTTCATGATCCGCCGCTCC CGCGGCTATGCCCCGAAGCCGATTCCTCTTCTGCGCTCCTGTCCCAACGTGCTGGCCCTCGGCCCCCAGCTCAAGACAAC GCTCTGCATTCTCAAGGGAAATCTTGCCTATCTCAGTCCCCATATCGGCGACATGGACACCCCGGAGGCTCGAAAATTCC ACCAGGAAAGCCTCCAGCTCATGGAACGGATCGCCCAGTGTCGACCCGATGTGCTCGCCTGCGATCTTCACCCCGCCTAT TACACGACCCGCCTGGCGGAAGAGCTGCCCCACCGGACTGTTCTCCGAATCCAGCATCACCACGCCCATATCGTCAGCGC CATGGCCGAAAACGGCCTCACCGGCAAGGTGATCGGCCTGGCGATGGACGGAACGGGTTACGGAACAGACGGAACGGCCT GGGGCTGCGAGTTCCTCCTGGCGGATGAGGTGGACTTTCAGCGGGCGGGACACCTGAGGCCCTATCCGCTTCCCGGTTCG GACAGGGCGGTCCGGGAGCCATGGCGCGCGGCGGTCAGCCTCCTGCGGGAAAGCTATGGAGAGTTCTGGCGGGAAATCGC TGGAAATCTCCCCCTGAAGGACCATGCACCGCACTTCGAACTTCTGGATAAGATGATGGCCCACGGTTTGAACAGTCCCC CAACATCCAGCCTCGGTCGGGTGTTCGACGCCGTGGCCGCTCTTCTGGGAATCCGCCAGGTCGTGAACTTCGAAGGACAG GCGGCCATGGCATTGGAGGCCATGGCGTCTGCACCTGCAGAAAAAACCTATACCTTCGATATTTTTGAAGGGGACCGGAT CGTCCTCGATCTCCGACCTCTGATCCGCGCCATTGTCCAGGAACAACTGTCAGGGAGAGAGCCGCAGAAGATCGCTTCCG ATTTCCATCGGACCCTCAGTCGGGCTTTGGCGGCCGTGACGGCAAAGATCCGCATGCGGACCGGAATTGAAAAGGCAGTC CTGAGCGGCGGTTGTTTTCAGAACCGGATACTTCTCGACAGTGTGGCTCGGGAATTGGAGCAGGAAGGGTTTGCGGTTTA CCTCCACAGAGACCTGCCGCCGAACGATGGCTGCATTGCCCTGGGCCAGGCCGTTGCGGCCGCCGCACGCATGGAAAGGC AAGAGGCAGGACGGTAA
Upstream 100 bases:
>100_bases ACCTGGAAAGGGCAAAGCGCACCGCCCTGTCCCTGAATCGGGATTTGAAGATTTTTGAAGTCTCCTGCAGGAATGACGAA GGCCTGGAAGGCTGGTATTC
Downstream 100 bases:
>100_bases AAACAGGAAACGGCCATTGAATACAAAAACGCAATAAAGGAAAAAGGTTATAGCCCGATGGATCATGATCGAATTCTTCT GGAACATGGTGGGGGAGGAT
Product: hydrogenase maturation protein
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 778; Mature: 777
Protein sequence:
>778_residues MACRTDRGLSQFMSRKIRRVRCLFTGIVQGVGFRPYIYRMATNYSLGGFVCNIPEGVVAEVEGTAPQIEAFLSAVPKELP PAAALTALSNTDVSLLGETEFQIISSRAEGNKAVLIAPDIAVCENCLREFRDPGDRRYRYPFINCTDCGPRLTIIRDVPY DREKTSMACFPLCPQCRAEYENPANRRFHAEPNACPSCGPKLWLTDENGTPFSDDFNDPIAKAIELLSKGKILAVKGLGG FHLAVDATDEGAVRRLRSRKYREEKPLAVMVRDLEAASKIAEIGDRERKLLFSPQRPIVLCRKRGAKEIAPSVAPGVPDR GIMLPYTPLHYLLLENTLSALVMTSANQSDEPICIGNREALKRLKGIADAYLLHNRDILVRCDDSVATVTQGKTFMIRRS RGYAPKPIPLLRSCPNVLALGPQLKTTLCILKGNLAYLSPHIGDMDTPEARKFHQESLQLMERIAQCRPDVLACDLHPAY YTTRLAEELPHRTVLRIQHHHAHIVSAMAENGLTGKVIGLAMDGTGYGTDGTAWGCEFLLADEVDFQRAGHLRPYPLPGS DRAVREPWRAAVSLLRESYGEFWREIAGNLPLKDHAPHFELLDKMMAHGLNSPPTSSLGRVFDAVAALLGIRQVVNFEGQ AAMALEAMASAPAEKTYTFDIFEGDRIVLDLRPLIRAIVQEQLSGREPQKIASDFHRTLSRALAAVTAKIRMRTGIEKAV LSGGCFQNRILLDSVARELEQEGFAVYLHRDLPPNDGCIALGQAVAAAARMERQEAGR
Sequences:
>Translated_778_residues MACRTDRGLSQFMSRKIRRVRCLFTGIVQGVGFRPYIYRMATNYSLGGFVCNIPEGVVAEVEGTAPQIEAFLSAVPKELP PAAALTALSNTDVSLLGETEFQIISSRAEGNKAVLIAPDIAVCENCLREFRDPGDRRYRYPFINCTDCGPRLTIIRDVPY DREKTSMACFPLCPQCRAEYENPANRRFHAEPNACPSCGPKLWLTDENGTPFSDDFNDPIAKAIELLSKGKILAVKGLGG FHLAVDATDEGAVRRLRSRKYREEKPLAVMVRDLEAASKIAEIGDRERKLLFSPQRPIVLCRKRGAKEIAPSVAPGVPDR GIMLPYTPLHYLLLENTLSALVMTSANQSDEPICIGNREALKRLKGIADAYLLHNRDILVRCDDSVATVTQGKTFMIRRS RGYAPKPIPLLRSCPNVLALGPQLKTTLCILKGNLAYLSPHIGDMDTPEARKFHQESLQLMERIAQCRPDVLACDLHPAY YTTRLAEELPHRTVLRIQHHHAHIVSAMAENGLTGKVIGLAMDGTGYGTDGTAWGCEFLLADEVDFQRAGHLRPYPLPGS DRAVREPWRAAVSLLRESYGEFWREIAGNLPLKDHAPHFELLDKMMAHGLNSPPTSSLGRVFDAVAALLGIRQVVNFEGQ AAMALEAMASAPAEKTYTFDIFEGDRIVLDLRPLIRAIVQEQLSGREPQKIASDFHRTLSRALAAVTAKIRMRTGIEKAV LSGGCFQNRILLDSVARELEQEGFAVYLHRDLPPNDGCIALGQAVAAAARMERQEAGR >Mature_777_residues ACRTDRGLSQFMSRKIRRVRCLFTGIVQGVGFRPYIYRMATNYSLGGFVCNIPEGVVAEVEGTAPQIEAFLSAVPKELPP AAALTALSNTDVSLLGETEFQIISSRAEGNKAVLIAPDIAVCENCLREFRDPGDRRYRYPFINCTDCGPRLTIIRDVPYD REKTSMACFPLCPQCRAEYENPANRRFHAEPNACPSCGPKLWLTDENGTPFSDDFNDPIAKAIELLSKGKILAVKGLGGF HLAVDATDEGAVRRLRSRKYREEKPLAVMVRDLEAASKIAEIGDRERKLLFSPQRPIVLCRKRGAKEIAPSVAPGVPDRG IMLPYTPLHYLLLENTLSALVMTSANQSDEPICIGNREALKRLKGIADAYLLHNRDILVRCDDSVATVTQGKTFMIRRSR GYAPKPIPLLRSCPNVLALGPQLKTTLCILKGNLAYLSPHIGDMDTPEARKFHQESLQLMERIAQCRPDVLACDLHPAYY TTRLAEELPHRTVLRIQHHHAHIVSAMAENGLTGKVIGLAMDGTGYGTDGTAWGCEFLLADEVDFQRAGHLRPYPLPGSD RAVREPWRAAVSLLRESYGEFWREIAGNLPLKDHAPHFELLDKMMAHGLNSPPTSSLGRVFDAVAALLGIRQVVNFEGQA AMALEAMASAPAEKTYTFDIFEGDRIVLDLRPLIRAIVQEQLSGREPQKIASDFHRTLSRALAAVTAKIRMRTGIEKAVL SGGCFQNRILLDSVARELEQEGFAVYLHRDLPPNDGCIALGQAVAAAARMERQEAGR
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=755, Percent_Identity=39.7350993377483, Blast_Score=443, Evalue=1e-125,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85996; Mature: 85865
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACRTDRGLSQFMSRKIRRVRCLFTGIVQGVGFRPYIYRMATNYSLGGFVCNIPEGVVAE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCEEE VEGTAPQIEAFLSAVPKELPPAAALTALSNTDVSLLGETEFQIISSRAEGNKAVLIAPDI CCCCCHHHHHHHHHCCHHCCCHHHHHHHCCCCEEEECCCHHHHHHCCCCCCEEEEECCCH AVCENCLREFRDPGDRRYRYPFINCTDCGPRLTIIRDVPYDREKTSMACFPLCPQCRAEY HHHHHHHHHHCCCCCCEEECCEEEECCCCCCEEEEECCCCCCCCCCEEECCCCHHHHHCC ENPANRRFHAEPNACPSCGPKLWLTDENGTPFSDDFNDPIAKAIELLSKGKILAVKGLGG CCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC FHLAVDATDEGAVRRLRSRKYREEKPLAVMVRDLEAASKIAEIGDRERKLLFSPQRPIVL EEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEECCCCCEEH CRKRGAKEIAPSVAPGVPDRGIMLPYTPLHYLLLENTLSALVMTSANQSDEPICIGNREA HHHCCCHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHEECCCCCCCCEEECCHHH LKRLKGIADAYLLHNRDILVRCDDSVATVTQGKTFMIRRSRGYAPKPIPLLRSCPNVLAL HHHHHHHHHHHHEECCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCHHHHCCCHHEEE GPQLKTTLCILKGNLAYLSPHIGDMDTPEARKFHQESLQLMERIAQCRPDVLACDLHPAY CCCHHHEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH YTTRLAEELPHRTVLRIQHHHAHIVSAMAENGLTGKVIGLAMDGTGYGTDGTAWGCEFLL HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEE ADEVDFQRAGHLRPYPLPGSDRAVREPWRAAVSLLRESYGEFWREIAGNLPLKDHAPHFE ECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH LLDKMMAHGLNSPPTSSLGRVFDAVAALLGIRQVVNFEGQAAMALEAMASAPAEKTYTFD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE IFEGDRIVLDLRPLIRAIVQEQLSGREPQKIASDFHRTLSRALAAVTAKIRMRTGIEKAV EECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH LSGGCFQNRILLDSVARELEQEGFAVYLHRDLPPNDGCIALGQAVAAAARMERQEAGR HCCCCHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ACRTDRGLSQFMSRKIRRVRCLFTGIVQGVGFRPYIYRMATNYSLGGFVCNIPEGVVAE CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCEEE VEGTAPQIEAFLSAVPKELPPAAALTALSNTDVSLLGETEFQIISSRAEGNKAVLIAPDI CCCCCHHHHHHHHHCCHHCCCHHHHHHHCCCCEEEECCCHHHHHHCCCCCCEEEEECCCH AVCENCLREFRDPGDRRYRYPFINCTDCGPRLTIIRDVPYDREKTSMACFPLCPQCRAEY HHHHHHHHHHCCCCCCEEECCEEEECCCCCCEEEEECCCCCCCCCCEEECCCCHHHHHCC ENPANRRFHAEPNACPSCGPKLWLTDENGTPFSDDFNDPIAKAIELLSKGKILAVKGLGG CCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC FHLAVDATDEGAVRRLRSRKYREEKPLAVMVRDLEAASKIAEIGDRERKLLFSPQRPIVL EEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEECCCCCEEH CRKRGAKEIAPSVAPGVPDRGIMLPYTPLHYLLLENTLSALVMTSANQSDEPICIGNREA HHHCCCHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHEECCCCCCCCEEECCHHH LKRLKGIADAYLLHNRDILVRCDDSVATVTQGKTFMIRRSRGYAPKPIPLLRSCPNVLAL HHHHHHHHHHHHEECCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCHHHHCCCHHEEE GPQLKTTLCILKGNLAYLSPHIGDMDTPEARKFHQESLQLMERIAQCRPDVLACDLHPAY CCCHHHEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH YTTRLAEELPHRTVLRIQHHHAHIVSAMAENGLTGKVIGLAMDGTGYGTDGTAWGCEFLL HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEE ADEVDFQRAGHLRPYPLPGSDRAVREPWRAAVSLLRESYGEFWREIAGNLPLKDHAPHFE ECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH LLDKMMAHGLNSPPTSSLGRVFDAVAALLGIRQVVNFEGQAAMALEAMASAPAEKTYTFD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE IFEGDRIVLDLRPLIRAIVQEQLSGREPQKIASDFHRTLSRALAAVTAKIRMRTGIEKAV EECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH LSGGCFQNRILLDSVARELEQEGFAVYLHRDLPPNDGCIALGQAVAAAARMERQEAGR HCCCCHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]