| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85859887
Identifier: 85859887
GI number: 85859887
Start: 2123862
End: 2124899
Strand: Direct
Name: 85859887
Synonym: SYN_00500
Alternate gene names: NA
Gene position: 2123862-2124899 (Clockwise)
Preceding gene: 85859885
Following gene: 85859888
Centisome position: 66.8
GC content: 36.8
Gene sequence:
>1038_bases TTGTGGTCAAGGCAATCCCGAATTTTGAGTAGGTATAAGCAAATGCCAGTAGTCCATTTCTTAAATGTTAAAGAAGGTGA TTGCTCAATTATTGAGCATACATCTGGGCATATTTCTGTAATCGATGTATGTAACGCCCGCAAAGAAACTCCGGAATCAA AAATTGTCGAGTCAATTGTTAAAAATATTATGACGAAGGCAGCAGGTTCAGGAAATCTTAACCAAAAAGCTTATCCGGTA AATCCAATTTCTTACATGAAAGAGCGTTCCTTAACTTCTGTTTTTAGATTTGTTGCCACGCATCCGGATATGGATCATAT AGATGGTATCAAAGATTTTTTTGAGGAATTTAATCCGACAAATTTTTACGATATTGAAAACGAAAAGGAAATCGAGTTTA ACGATAAATCTCCATATCTAGAGGAAGATTGGAAATTTTACAAAAATCTAAGAGACACCGACCCTGATACAGATCCTCGT CGTTTGACACTCTTTTCTGGCGATTCTGGAATTTACAGGACAAAGAATTGGGATGGCAATCCTCCTGGTGATGCTTTTTA TGTTCTTGCCCCAACATCTGAGATGGTTAGAGAGGCAAAAGAATTGGAAGATTACAATGATTGTTCTTATGTAATTCTGT ATCGTAGCCCTGGTGGAAAGATACTGTTTGGGGGTGATAGTCACGATGGAACATGGGAACATTTATTGAAAAATCATGAA AATTCTATAAAAAACGTAGATTTACTCATTGCTCCGCATCATGGCCGGAAATCAGACAGGGATTATAGTTTTCTTGACGT AGTGAATCCAAAAATGACTTTCTTTGGAAACGCGCGATCAGAACACTTGGCTTATTCAGCATGGAGTTCCAGAAATCTTC CTTACATAACAAATAATCAGGCGGACTGTATGATCGTTAATGCCAACGACGAGCATATGCCAATTTATGTCACTAATGAA ACCTTCGCTAAACAGAGAAATCCCAAAAGTCAATATTCAAGTAGATTTAAAGGATGGTTTTTGCAAAATATAAAATAA
Upstream 100 bases:
>100_bases GAGTTTCATCGAACCCAGAATGCTATCATTCTTAAACCGAGGTCGCCCAATCCGAATCATAAGCCGATTATTTTAACTTC CGATTTCCGAATTCAAGGGA
Downstream 100 bases:
>100_bases TTGCTTATGAAAATTCATATCTTTGATGTTGAGCATGGCGAATGTAATGCCATAGAAACTCCCTCTGGGCACCTGTTTTT GATTGGTACAGGCCATAATT
Product: metallo-beta-lactamase superfamily hydrolase
Products: NA
Alternate protein names: Hydrolase
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MWSRQSRILSRYKQMPVVHFLNVKEGDCSIIEHTSGHISVIDVCNARKETPESKIVESIVKNIMTKAAGSGNLNQKAYPV NPISYMKERSLTSVFRFVATHPDMDHIDGIKDFFEEFNPTNFYDIENEKEIEFNDKSPYLEEDWKFYKNLRDTDPDTDPR RLTLFSGDSGIYRTKNWDGNPPGDAFYVLAPTSEMVREAKELEDYNDCSYVILYRSPGGKILFGGDSHDGTWEHLLKNHE NSIKNVDLLIAPHHGRKSDRDYSFLDVVNPKMTFFGNARSEHLAYSAWSSRNLPYITNNQADCMIVNANDEHMPIYVTNE TFAKQRNPKSQYSSRFKGWFLQNIK
Sequences:
>Translated_345_residues MWSRQSRILSRYKQMPVVHFLNVKEGDCSIIEHTSGHISVIDVCNARKETPESKIVESIVKNIMTKAAGSGNLNQKAYPV NPISYMKERSLTSVFRFVATHPDMDHIDGIKDFFEEFNPTNFYDIENEKEIEFNDKSPYLEEDWKFYKNLRDTDPDTDPR RLTLFSGDSGIYRTKNWDGNPPGDAFYVLAPTSEMVREAKELEDYNDCSYVILYRSPGGKILFGGDSHDGTWEHLLKNHE NSIKNVDLLIAPHHGRKSDRDYSFLDVVNPKMTFFGNARSEHLAYSAWSSRNLPYITNNQADCMIVNANDEHMPIYVTNE TFAKQRNPKSQYSSRFKGWFLQNIK >Mature_345_residues MWSRQSRILSRYKQMPVVHFLNVKEGDCSIIEHTSGHISVIDVCNARKETPESKIVESIVKNIMTKAAGSGNLNQKAYPV NPISYMKERSLTSVFRFVATHPDMDHIDGIKDFFEEFNPTNFYDIENEKEIEFNDKSPYLEEDWKFYKNLRDTDPDTDPR RLTLFSGDSGIYRTKNWDGNPPGDAFYVLAPTSEMVREAKELEDYNDCSYVILYRSPGGKILFGGDSHDGTWEHLLKNHE NSIKNVDLLIAPHHGRKSDRDYSFLDVVNPKMTFFGNARSEHLAYSAWSSRNLPYITNNQADCMIVNANDEHMPIYVTNE TFAKQRNPKSQYSSRFKGWFLQNIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39926; Mature: 39926
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWSRQSRILSRYKQMPVVHFLNVKEGDCSIIEHTSGHISVIDVCNARKETPESKIVESIV CCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH KNIMTKAAGSGNLNQKAYPVNPISYMKERSLTSVFRFVATHPDMDHIDGIKDFFEEFNPT HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC NFYDIENEKEIEFNDKSPYLEEDWKFYKNLRDTDPDTDPRRLTLFSGDSGIYRTKNWDGN CEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCC PPGDAFYVLAPTSEMVREAKELEDYNDCSYVILYRSPGGKILFGGDSHDGTWEHLLKNHE CCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHCC NSIKNVDLLIAPHHGRKSDRDYSFLDVVNPKMTFFGNARSEHLAYSAWSSRNLPYITNNQ CCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECCCCCCCCEEECCC ADCMIVNANDEHMPIYVTNETFAKQRNPKSQYSSRFKGWFLQNIK CCEEEECCCCCEEEEEEECHHHHHCCCCHHHHHHHHCCHHHCCCC >Mature Secondary Structure MWSRQSRILSRYKQMPVVHFLNVKEGDCSIIEHTSGHISVIDVCNARKETPESKIVESIV CCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH KNIMTKAAGSGNLNQKAYPVNPISYMKERSLTSVFRFVATHPDMDHIDGIKDFFEEFNPT HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC NFYDIENEKEIEFNDKSPYLEEDWKFYKNLRDTDPDTDPRRLTLFSGDSGIYRTKNWDGN CEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCC PPGDAFYVLAPTSEMVREAKELEDYNDCSYVILYRSPGGKILFGGDSHDGTWEHLLKNHE CCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHCC NSIKNVDLLIAPHHGRKSDRDYSFLDVVNPKMTFFGNARSEHLAYSAWSSRNLPYITNNQ CCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEECCCCCCCCEEECCC ADCMIVNANDEHMPIYVTNETFAKQRNPKSQYSSRFKGWFLQNIK CCEEEECCCCCEEEEEEECHHHHHCCCCHHHHHHHHCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA