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The map label for this gene is rplY

Identifier: 85859731

GI number: 85859731

Start: 1960536

End: 1961138

Strand: Direct

Name: rplY

Synonym: SYN_02768

Alternate gene names: 85859731

Gene position: 1960536-1961138 (Clockwise)

Preceding gene: 85859730

Following gene: 85859732

Centisome position: 61.67

GC content: 48.26

Gene sequence:

>603_bases
ATGGAAGCGCGTGAGTTAAAGGCCAACGTACGCAAGGAATCCGGTAAGGAACAAGCCAGGCGTATGCGACGTGAAGGATT
AATCCCTGCAGTTTTATATGGTCCCGGAACAGACCCGGTTTCATTGTCAGTCAACGCTTCCGATCTCAAAACGGCATTAA
AAGGTGCGGAAGAGAATGTATTGATTAAACTCATTATTGATGATTCCGGAAGACTGATGGAAAAAAATTCCCTCATCAGG
GAGCTTCAGATCGAACCCCTGACAAACAATTTTTTCCATGCGGATTTTTACGCACTCCGCATGGATCAAGAGTCGACGTT
TGATGTGCCCATCCATTTTGAAGGACAACCGGTGGGGATCGAAAAAGGCGGCGAACTGCAGTATCTCAAGAGGGAAATCA
AGGTTTCCTGCCTCCCCTCGGAACTGCCCGATTGCATAACCGTTGACATTTCGCGGCTCGACGTGGGTGATGCCGTTCTC
ATCGGGGATCTCAGCCTGTCTGAGAGCATCCGCTGTTTTGATTCAAAAGACATTGTACTGGTAACGATAGCCGCTCTTCA
CGGCGTGAACAAAGCTGAAGAAACGGAAGAAGCTTCCTCATAA

Upstream 100 bases:

>100_bases
CCGGATCAGTGTTCTCTCCGTTGCGGGACTGCTCAGTGAAGCAGTCCGGAGAATCTATTATAACGATTCTGTAAGTTCAC
TTTTTATATAGGAGGAGTAG

Downstream 100 bases:

>100_bases
AGGCATTTCGTCATCACGGAAAGTCCTTATCATTTCATTATTGAGAGGTTCTTTTGAAGCTGATTGTGGGACTCGGGAAC
CCCGGCGCCCGGTACCGATT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MEARELKANVRKESGKEQARRMRREGLIPAVLYGPGTDPVSLSVNASDLKTALKGAEENVLIKLIIDDSGRLMEKNSLIR
ELQIEPLTNNFFHADFYALRMDQESTFDVPIHFEGQPVGIEKGGELQYLKREIKVSCLPSELPDCITVDISRLDVGDAVL
IGDLSLSESIRCFDSKDIVLVTIAALHGVNKAEETEEASS

Sequences:

>Translated_200_residues
MEARELKANVRKESGKEQARRMRREGLIPAVLYGPGTDPVSLSVNASDLKTALKGAEENVLIKLIIDDSGRLMEKNSLIR
ELQIEPLTNNFFHADFYALRMDQESTFDVPIHFEGQPVGIEKGGELQYLKREIKVSCLPSELPDCITVDISRLDVGDAVL
IGDLSLSESIRCFDSKDIVLVTIAALHGVNKAEETEEASS
>Mature_200_residues
MEARELKANVRKESGKEQARRMRREGLIPAVLYGPGTDPVSLSVNASDLKTALKGAEENVLIKLIIDDSGRLMEKNSLIR
ELQIEPLTNNFFHADFYALRMDQESTFDVPIHFEGQPVGIEKGGELQYLKREIKVSCLPSELPDCITVDISRLDVGDAVL
IGDLSLSESIRCFDSKDIVLVTIAALHGVNKAEETEEASS

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_SYNAS (Q2LUK6)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_461933.1
- ProteinModelPortal:   Q2LUK6
- SMR:   Q2LUK6
- STRING:   Q2LUK6
- GeneID:   3883607
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_02768
- NMPDR:   fig|56780.10.peg.1877
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- OMA:   LNIVRHE
- ProtClustDB:   PRK05618
- BioCyc:   SACI56780:SYN_02768-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 22113; Mature: 22113

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEARELKANVRKESGKEQARRMRREGLIPAVLYGPGTDPVSLSVNASDLKTALKGAEENV
CCHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEECHHHHHHHHCCCCCCE
LIKLIIDDSGRLMEKNSLIRELQIEPLTNNFFHADFYALRMDQESTFDVPIHFEGQPVGI
EEEEEECCCCCEEHHHHHHHHEEECCCCCCEEECEEEEEEECCCCCCCEEEEECCCEECC
EKGGELQYLKREIKVSCLPSELPDCITVDISRLDVGDAVLIGDLSLSESIRCFDSKDIVL
CCCCCHHHHHHHHEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEECCCCCEEE
VTIAALHGVNKAEETEEASS
EEEEHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MEARELKANVRKESGKEQARRMRREGLIPAVLYGPGTDPVSLSVNASDLKTALKGAEENV
CCHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEECHHHHHHHHCCCCCCE
LIKLIIDDSGRLMEKNSLIRELQIEPLTNNFFHADFYALRMDQESTFDVPIHFEGQPVGI
EEEEEECCCCCEEHHHHHHHHEEECCCCCCEEECEEEEEEECCCCCCCEEEEECCCEECC
EKGGELQYLKREIKVSCLPSELPDCITVDISRLDVGDAVLIGDLSLSESIRCFDSKDIVL
CCCCCHHHHHHHHEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEECCCCCEEE
VTIAALHGVNKAEETEEASS
EEEEHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA