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The map label for this gene is ybgI [C]

Identifier: 85859646

GI number: 85859646

Start: 1875089

End: 1875847

Strand: Direct

Name: ybgI [C]

Synonym: SYN_01923

Alternate gene names: 85859646

Gene position: 1875089-1875847 (Clockwise)

Preceding gene: 85859645

Following gene: 85859647

Centisome position: 58.98

GC content: 51.65

Gene sequence:

>759_bases
ATGGAACTTGAACGCATCACCGACTATATCGATTCCTACCTGGACATCCACTCCTACCATGACGATTCAGCAAATGGCCT
GCAGGTTGAAAACACAGGAAATGTAAAAAAAATCGGCCTTGCCGTCGATGCCTGCCACGAATCTATCTCCAGGGCCTGCA
GAGCGGGATGCGATCTGCTCATCGTGCATCACGGCCTGTTCTGGGGCAGCCAGCAACTTATTGTCGACAATCATTACCAG
CGAATCCGGGCTCTTATCATGGCCGATCTGGCCCTGTATGCCGCCCATATCCCGCTGGATGCCCATCCGATAATCGGCCA
TAACCGGGTCATCGCAGAGCATCTTGACCTTGAAGACATCGAACCCTTTGCCCTGCATCATGGTAAACATATCGGTGTAA
AGGGGCGGTTCAGGCAGTCCGGCTCACGCGCCGAAGCAGCGATCTGGATTGAAAAGGAACTGGGCGCCTGCAGGGGACTT
CTGGAGTTCGGTCCGGAAACCATTTCTACGGTAGCCGTAGTTGCCGGCTCGGCAACCGATATTGAACTTTTCAGGGAATT
GAAACGCGACGGAATTGATTTTTTTGTCACCGGCGAGCCCAAGTACGCCGCTTATCATATGGCTAAAGAGTTTGGTCTGA
ATATTTTTTACGGCGGCCATTACCAAACGGAAACGTTCGGTATCAAAGCATTAGGTGAGCATCTGCAGAGGCTGTTTGCA
ATCCCCGTTGTTTTCATGGATACACCCTGCATCTTCTGA

Upstream 100 bases:

>100_bases
TTATAAGAGATTTAATTTATCTTTGTTGACATAATTCAAGTTGACTTGACATTTTAATCTGTTATCATTTTGCAACATTT
ACATAAATCACATATGCCTT

Downstream 100 bases:

>100_bases
AATCGACTTCGCGCCGTTCCCGAAAGCGGCGCATTGAGGTGCGCGGCAGCACAGTTTCTGCAACGATTTTTTAACAGTTT
TACAGGAGGGTTTTATGCCA

Product: nif3-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MELERITDYIDSYLDIHSYHDDSANGLQVENTGNVKKIGLAVDACHESISRACRAGCDLLIVHHGLFWGSQQLIVDNHYQ
RIRALIMADLALYAAHIPLDAHPIIGHNRVIAEHLDLEDIEPFALHHGKHIGVKGRFRQSGSRAEAAIWIEKELGACRGL
LEFGPETISTVAVVAGSATDIELFRELKRDGIDFFVTGEPKYAAYHMAKEFGLNIFYGGHYQTETFGIKALGEHLQRLFA
IPVVFMDTPCIF

Sequences:

>Translated_252_residues
MELERITDYIDSYLDIHSYHDDSANGLQVENTGNVKKIGLAVDACHESISRACRAGCDLLIVHHGLFWGSQQLIVDNHYQ
RIRALIMADLALYAAHIPLDAHPIIGHNRVIAEHLDLEDIEPFALHHGKHIGVKGRFRQSGSRAEAAIWIEKELGACRGL
LEFGPETISTVAVVAGSATDIELFRELKRDGIDFFVTGEPKYAAYHMAKEFGLNIFYGGHYQTETFGIKALGEHLQRLFA
IPVVFMDTPCIF
>Mature_252_residues
MELERITDYIDSYLDIHSYHDDSANGLQVENTGNVKKIGLAVDACHESISRACRAGCDLLIVHHGLFWGSQQLIVDNHYQ
RIRALIMADLALYAAHIPLDAHPIIGHNRVIAEHLDLEDIEPFALHHGKHIGVKGRFRQSGSRAEAAIWIEKELGACRGL
LEFGPETISTVAVVAGSATDIELFRELKRDGIDFFVTGEPKYAAYHMAKEFGLNIFYGGHYQTETFGIKALGEHLQRLFA
IPVVFMDTPCIF

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=255, Percent_Identity=36.078431372549, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 28151; Mature: 28151

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELERITDYIDSYLDIHSYHDDSANGLQVENTGNVKKIGLAVDACHESISRACRAGCDLL
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCEE
IVHHGLFWGSQQLIVDNHYQRIRALIMADLALYAAHIPLDAHPIIGHNRVIAEHLDLEDI
EEECCHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCC
EPFALHHGKHIGVKGRFRQSGSRAEAAIWIEKELGACRGLLEFGPETISTVAVVAGSATD
CHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHCCCCCHH
IELFRELKRDGIDFFVTGEPKYAAYHMAKEFGLNIFYGGHYQTETFGIKALGEHLQRLFA
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCEEEECCEEECHHHHHHHHHHHHHHHHH
IPVVFMDTPCIF
CCHHEECCCCCC
>Mature Secondary Structure
MELERITDYIDSYLDIHSYHDDSANGLQVENTGNVKKIGLAVDACHESISRACRAGCDLL
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCEE
IVHHGLFWGSQQLIVDNHYQRIRALIMADLALYAAHIPLDAHPIIGHNRVIAEHLDLEDI
EEECCHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCC
EPFALHHGKHIGVKGRFRQSGSRAEAAIWIEKELGACRGLLEFGPETISTVAVVAGSATD
CHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHCCCCCHH
IELFRELKRDGIDFFVTGEPKYAAYHMAKEFGLNIFYGGHYQTETFGIKALGEHLQRLFA
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCEEEECCEEECHHHHHHHHHHHHHHHHH
IPVVFMDTPCIF
CCHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]