Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is 85859412

Identifier: 85859412

GI number: 85859412

Start: 1618673

End: 1619326

Strand: Direct

Name: 85859412

Synonym: SYN_02934

Alternate gene names: NA

Gene position: 1618673-1619326 (Clockwise)

Preceding gene: 85859408

Following gene: 85859413

Centisome position: 50.91

GC content: 43.88

Gene sequence:

>654_bases
ATGTCAAATTCAAACATAATCCGATTTCATTTTCACATTGTGCGTTCGGAATTTCATCAGGCAGGCAGAAATCATGTTCA
CATAAAATTCTTGTATTTTGATCAGCGATGCCGATATAATTTTGTGCTTATTTTAAACAGAGACAAGAGGGCTTCTCAGG
TGAAGATTGGTGTGATTTCGGATACCCATCTGCCCGGCTGCGATGAAAAGCTGAAAAGAATTGTCGACCGGTATTTTCAC
GATGTGGACATGATTATCCATGCCGGGGATCTTGTGGATATCCGTGTTCTGGATGCATTTGGCGACAGGCAGGTCAGGGC
GGTTTGTGGAAATATGGATAACCTTTCGGTTCGACAGCGTCTTCCGGATCGTTTGATTCTTGACATCCAGGGATTTCATC
TGGGAGTAATGCACGGCTGGGGAACAGCCGAGAACCTTGAAGAGAAGATATATCATCTTCTTGGTCCCGTGGACTGTCTC
ATCTACGGGCATACACATTATCCTGTAAACAGAGTGAAAGAGGGGGTGCTCTTTTTTAATCCGGGATCGGCATTGGATAA
ACGGTTCACTCGGGAAAATACGTTGGGAATTCTGAAGATCGGGGATCGGATCACAGGGGAAATCATCAAAATTGAAATTG
AAAAAGAACAATGA

Upstream 100 bases:

>100_bases
CAGATTCAGAATGGTTTCCGATATTTTATCCAGCGAAGACTCAAGCATGATCAAACTCCAGCAAATATATTCGCGCCAAT
TTAGAACAGCCATAACCGAT

Downstream 100 bases:

>100_bases
ATACCGTAATAGTAAGAGTCCGGCTGTTCAAGGATAGGGATTCTTTTGACACTGCCTGCGGGTGGCGACAGTAGAATCCG
CATCGTTTTTAATGTCAGAT

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSNSNIIRFHFHIVRSEFHQAGRNHVHIKFLYFDQRCRYNFVLILNRDKRASQVKIGVISDTHLPGCDEKLKRIVDRYFH
DVDMIIHAGDLVDIRVLDAFGDRQVRAVCGNMDNLSVRQRLPDRLILDIQGFHLGVMHGWGTAENLEEKIYHLLGPVDCL
IYGHTHYPVNRVKEGVLFFNPGSALDKRFTRENTLGILKIGDRITGEIIKIEIEKEQ

Sequences:

>Translated_217_residues
MSNSNIIRFHFHIVRSEFHQAGRNHVHIKFLYFDQRCRYNFVLILNRDKRASQVKIGVISDTHLPGCDEKLKRIVDRYFH
DVDMIIHAGDLVDIRVLDAFGDRQVRAVCGNMDNLSVRQRLPDRLILDIQGFHLGVMHGWGTAENLEEKIYHLLGPVDCL
IYGHTHYPVNRVKEGVLFFNPGSALDKRFTRENTLGILKIGDRITGEIIKIEIEKEQ
>Mature_216_residues
SNSNIIRFHFHIVRSEFHQAGRNHVHIKFLYFDQRCRYNFVLILNRDKRASQVKIGVISDTHLPGCDEKLKRIVDRYFHD
VDMIIHAGDLVDIRVLDAFGDRQVRAVCGNMDNLSVRQRLPDRLILDIQGFHLGVMHGWGTAENLEEKIYHLLGPVDCLI
YGHTHYPVNRVKEGVLFFNPGSALDKRFTRENTLGILKIGDRITGEIIKIEIEKEQ

Specific function: Unknown

COG id: COG0622

COG function: function code R; Predicted phosphoesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallophosphoesterase superfamily. YfcE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR020935
- InterPro:   IPR000979 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: NA

Molecular weight: Translated: 25183; Mature: 25052

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSNIIRFHFHIVRSEFHQAGRNHVHIKFLYFDQRCRYNFVLILNRDKRASQVKIGVIS
CCCCCEEEEEEEEHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEE
DTHLPGCDEKLKRIVDRYFHDVDMIIHAGDLVDIRVLDAFGDRQVRAVCGNMDNLSVRQR
CCCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEECCCCCEEEHHHCCCCCCHHHHH
LPDRLILDIQGFHLGVMHGWGTAENLEEKIYHLLGPVDCLIYGHTHYPVNRVKEGVLFFN
CCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCCEEEEC
PGSALDKRFTRENTLGILKIGDRITGEIIKIEIEKEQ
CCCHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SNSNIIRFHFHIVRSEFHQAGRNHVHIKFLYFDQRCRYNFVLILNRDKRASQVKIGVIS
CCCCEEEEEEEEHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEE
DTHLPGCDEKLKRIVDRYFHDVDMIIHAGDLVDIRVLDAFGDRQVRAVCGNMDNLSVRQR
CCCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEECCCCCEEEHHHCCCCCCHHHHH
LPDRLILDIQGFHLGVMHGWGTAENLEEKIYHLLGPVDCLIYGHTHYPVNRVKEGVLFFN
CCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCCEEEEC
PGSALDKRFTRENTLGILKIGDRITGEIIKIEIEKEQ
CCCHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]