Click here to switch to the map view.

The map label for this gene is yhbH [C]

Identifier: 85859059

GI number: 85859059

Start: 1232126

End: 1232755

Strand: Direct

Name: yhbH [C]

Synonym: SYN_00944

Alternate gene names: 85859059

Gene position: 1232126-1232755 (Clockwise)

Preceding gene: 85859058

Following gene: 85859060

Centisome position: 38.75

GC content: 43.97

Gene sequence:

>630_bases
TTGATGTTCCCGTTTCGGGTTAAGCCGTTCGGCCGTATCATCATGTTACGGCCGTATCACGTTAAATGGATTCAAGGAGG
AGCTAAAATGATGAAAATTTCTGTGACCTTCAGGAATACGGAAGAAGAAGGCTGGCAAACGCAATATGTCGAGGACAGGG
TGAAAAGGTTAAATAAATATATTGACGCCCCTGCGGATGTTCACGTCGTTCTGACGGTTGAAAAGTTCAGAAATGTTGCA
GAAATAAGTGTAATGACCAATGGTTTGAATCTTATCGGCAAGGAAGAGTCGAAGGACATGCACCTGGCCATCGACAATGC
CGTTGAGAAGATAGAAAGACAACTTAAAAAACATAAGGAGAAAATCCGGGGCTATAAGAACAACACAATGAAAGAGGAAG
AGACGATTGAGGCTGAAGCCTTTCCCGGCGAACTGGAGGATGTTGCAGGGGCGAAGATTGTAGAGACAAGAAAAATCATT
TTAAAGCCCATGTCTCTGGATGATGCCGTCCTGGAAATGGATTCGACCAAAAATCGTTTTGTGGTCTATCGGAATGCGAT
ATCCGAAAACGTCAATGTCATTTACAGAAGGGATGATGGCGGTTATCTCCTGATCGAAACCAACGGTTGA

Upstream 100 bases:

>100_bases
AAAATTGCCCGGAGAACCGTTGCCAAATATCGAGAAATGATGAATATTCTGCCTTCATCCAGAAGGAGAAGGTATTTTTA
ACCTGGAAACATAACGTTCG

Downstream 100 bases:

>100_bases
TATCCTGTGCTTGAGGATCCGGCATGAAAATCACTGATTTGCTTAAAAAAGACTTTATCATCGAAGAGCTGGTCTCAACA
GGCAAGCAGGAAGTGCTTGA

Product: ribosome-associated factor Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MMFPFRVKPFGRIIMLRPYHVKWIQGGAKMMKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVA
EISVMTNGLNLIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGYKNNTMKEEETIEAEAFPGELEDVAGAKIVETRKII
LKPMSLDDAVLEMDSTKNRFVVYRNAISENVNVIYRRDDGGYLLIETNG

Sequences:

>Translated_209_residues
MMFPFRVKPFGRIIMLRPYHVKWIQGGAKMMKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVA
EISVMTNGLNLIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGYKNNTMKEEETIEAEAFPGELEDVAGAKIVETRKII
LKPMSLDDAVLEMDSTKNRFVVYRNAISENVNVIYRRDDGGYLLIETNG
>Mature_209_residues
MMFPFRVKPFGRIIMLRPYHVKWIQGGAKMMKISVTFRNTEEEGWQTQYVEDRVKRLNKYIDAPADVHVVLTVEKFRNVA
EISVMTNGLNLIGKEESKDMHLAIDNAVEKIERQLKKHKEKIRGYKNNTMKEEETIEAEAFPGELEDVAGAKIVETRKII
LKPMSLDDAVLEMDSTKNRFVVYRNAISENVNVIYRRDDGGYLLIETNG

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=32.6315789473684, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 24208; Mature: 24208

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFPFRVKPFGRIIMLRPYHVKWIQGGAKMMKISVTFRNTEEEGWQTQYVEDRVKRLNKY
CCCCCEECCCCCEEEECCCEEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
IDAPADVHVVLTVEKFRNVAEISVMTNGLNLIGKEESKDMHLAIDNAVEKIERQLKKHKE
HCCCCCEEEEEEEHHHCCEEEEEEEECCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHH
KIRGYKNNTMKEEETIEAEAFPGELEDVAGAKIVETRKIILKPMSLDDAVLEMDSTKNRF
HHCCCCCCCCCCHHCEECCCCCCCHHHHCCCEEEEEEEEEEECCCCCHHHEECCCCCCEE
VVYRNAISENVNVIYRRDDGGYLLIETNG
EEEECCCCCCCEEEEEECCCCEEEEEECC
>Mature Secondary Structure
MMFPFRVKPFGRIIMLRPYHVKWIQGGAKMMKISVTFRNTEEEGWQTQYVEDRVKRLNKY
CCCCCEECCCCCEEEECCCEEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
IDAPADVHVVLTVEKFRNVAEISVMTNGLNLIGKEESKDMHLAIDNAVEKIERQLKKHKE
HCCCCCEEEEEEEHHHCCEEEEEEEECCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHH
KIRGYKNNTMKEEETIEAEAFPGELEDVAGAKIVETRKIILKPMSLDDAVLEMDSTKNRF
HHCCCCCCCCCCHHCEECCCCCCCHHHHCCCEEEEEEEEEEECCCCCHHHEECCCCCCEE
VVYRNAISENVNVIYRRDDGGYLLIETNG
EEEECCCCCCCEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]