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The map label for this gene is yqgF [C]

Identifier: 85858514

GI number: 85858514

Start: 667236

End: 667688

Strand: Direct

Name: yqgF [C]

Synonym: SYN_01734

Alternate gene names: 85858514

Gene position: 667236-667688 (Clockwise)

Preceding gene: 85858511

Following gene: 85858515

Centisome position: 20.99

GC content: 54.3

Gene sequence:

>453_bases
ATGCGCATCTTGGGACTTGATTACGGTGAGAAGCGGATCGGAGTTGCCCTCTGTGATGAACTGGGGCTGACGGCTCAGGC
TTTGACCACCGTAATCAGGAAATCCTGGCGAAATGATGTCGGGATCATTGCGTCTCTGGTCCGGACCTACGATGTGGAGA
AAATCGTTATCGGCTATCCCCTGCGACTTGATGGCACGGAAGGAATTCAGTGCGAAAAGGTTGTCCGCTTTGCCCGCCGT
CTGGAAGCCGCCCTCGGTATTCCTGTCATTCGGTGGGATGAAACCCTGACGACGAAGGAGGCGGAAGAGATCCTGTCCCG
CTCCGGGGTTCCCCCAAGAAAAAGAAGGGGAGTCGTTGATCGCCTGGCTGCCAGTCTGATCCTTCAATCCTATCTGGATG
CCATATCGCAAGAAAAAATTCCTTCGGATGCCTGCGATGCAAATGAGTCGTGA

Upstream 100 bases:

>100_bases
AATCCCCGTATTCAGCACGGTTTATTCCGGCGCAATCTATTTTTCTGTTGCAAAGAACAGAGGGTATTGTTAATCAGTTC
GCCAAAAAGGAGCTGCGGTC

Downstream 100 bases:

>100_bases
AATGAGAAAAAAAAGGAAGAAGAAAAAAAAGCTTTTTACGGGTCTTCTGCTGGCACTGCTTTATCTTCTGGCGGCGTGGT
TTCTCTTCTATGTCGACCGG

Product: 4-amino-4-deoxychorismate lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MRILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPLRLDGTEGIQCEKVVRFARR
LEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVDRLAASLILQSYLDAISQEKIPSDACDANES

Sequences:

>Translated_150_residues
MRILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPLRLDGTEGIQCEKVVRFARR
LEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVDRLAASLILQSYLDAISQEKIPSDACDANES
>Mature_150_residues
MRILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPLRLDGTEGIQCEKVVRFARR
LEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVDRLAASLILQSYLDAISQEKIPSDACDANES

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=33.587786259542, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SYNAS (Q2LR42)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_460716.1
- ProteinModelPortal:   Q2LR42
- SMR:   Q2LR42
- STRING:   Q2LR42
- GeneID:   3882654
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_01734
- NMPDR:   fig|56780.10.peg.662
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q2LR42
- BioCyc:   SACI56780:SYN_01734-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16639; Mature: 16639

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYP
CEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCC
LRLDGTEGIQCEKVVRFARRLEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVD
EEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHH
RLAASLILQSYLDAISQEKIPSDACDANES
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYP
CEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCC
LRLDGTEGIQCEKVVRFARRLEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVD
EEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHH
RLAASLILQSYLDAISQEKIPSDACDANES
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA