| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85858439
Identifier: 85858439
GI number: 85858439
Start: 592716
End: 595424
Strand: Direct
Name: 85858439
Synonym: SYN_02251
Alternate gene names: NA
Gene position: 592716-595424 (Clockwise)
Preceding gene: 85858438
Following gene: 85858440
Centisome position: 18.64
GC content: 45.51
Gene sequence:
>2709_bases ATGACATGGCAGATACCTGATACATCCTACTGGGAAAACAAGTTTGCCGCCTACTGGCATGACCCTATCGATAAAGTCAT CAGCATTCAAAACCACGAAGAAAGGGCTGCTGATTATTTGCAGATATTCGGAATCGACAGACCGAACGATGAATTCTGGC AAATGGCTGATGCCATCGCTGCCGGTTTTGAGCGGGGGCAGGTTCCCTCACATAGTACTGACGATACTAAAAATGGGGCT GTAGACTTTGCTGAGTCACCGGTTATTACGCATCCGACTACCGGGAAAAAAGGTTTGCTGAAGATTACAGGTGTGAAGAT GCATATTAATGACCTTCATGCCGCCATCATGGAATTTCTGGGAAAACATATTGGAAAAGAAGCAGGAAATGGCGATTATG CAGATTGTTTTAAGGGTGATTACGCACGATTTGCCGTTGCCCGGTTTCTCTATACCCATCTCGTTTTGCGTTTTATCCTT GCTGAAAAGAACATCGGCGGACTTGGCGCACTTTGGCACCGCATCCCTGCTGATTCCCGGTTTCCCGACCATTCCATCTG GCAGCACAACGCGCTGTGTTCCGCCATCAGTTCCTGTGTTGAACTTGGCGGTAGAGCAGAAGAAGTCAGTCTCATGGTAT TTTCCATTACACCGGTTCAAGGATTTATCGCTCGTGCCAGAAAGATGCGCGATTATTGGACAGGTTCTGTTCTCTTGTCC TGGCTGGCCTTTGAAGGGCTTCGCTGGGTGATGGAGAATTTGGGGGCAGACCATATCCTGTATCCTTCCTTGATAGACCA ACCACTTGTAAACAATTATCTGGAAAAAGAATGGAATGTCTCAGGTCCATTCAAACCTGAAATTTGGAATAATCAGCCCA ATGAAATCGCCAGCCTGCCGAATAAATTTCTATTCCTTATTCCTTTCGGCAAAGCGGATGAAATAGCTGCAGAGTTGGAA AAAGCCATTTCGGAAAAATGGGCTGCAGTTGCCGACAAGGTAGCCGCTTATCTGATTGACAGGATAAGCATGGGCAATGA TGGCAGAGAACATATCCAAGAGATGTTTAAACGTCAGACTTCCGGATTCTGGGATTTCCAGTGGGCTGCGACCCGCCTTG CCGATTATACGGACAAAAAAGAATTGGAATCTCTACTCGACGAAACCCAGTGGAAAGATCAATTTGCTTACATGGAAGCA ATTCAACCAATTTTAAATAAAAAAGGATATTCTTCAGAAAATACCAGCAGAGGAATTCTTTATTCCACAAGCCACAGTCT GGTGCAATCGGCCCTTGCCGCAGAGAAGTCGATAAGATCGGTAGCGCGGACAGAAGAACCGGGAGAAAAATGCCAGATGT GCAGCGAATTCGAGGTTTTGCATTCCAAGCAATGGAATGGTGAAGTTGCAGGCCATTATGCCGACCATCTTAAGGAATTT TGGAGCCAGCTTAATCCAGAGCAAAAGGACGATGTTGATTTTAAAGAGAATGAACGGCTTTGTTCCGTTTGTTTAATCAA ACGTCTTGCCCCGCATATTTTGAAAAATTCAAATGACCATATTCTTTGTAACGTTTTCCGTTCCATCGACAACGTTCCTT CAACAACGGAAATGGCGCTTCATAACTATTTTCAAAGATTTGGCATTACCGATAAAAAAGACCAAAGGGTTATTGCTCAG AAACTCCACAAAGATGAAGAGCATGTCAGGGGCGAAAAGATCGATAACAGAGACAAATACTACGCTCTTCTCATGATGGA TGGAGACAATATGGGGAAACTGATCAACGGGGAAACGATTGCCTCATGCTGGAAGAAGATTATGCATCCCCAAATTGCTG AACGATTAACGGGAGTCGACTTTTATCCTTTGTATCGAGACGTCTGGCAGAAGATTTACGGCAATGCCGGGTTGAATAAA AGATTGGTTACACCGGCAATTCACGCGGCCATATCGGAAGCTTTGGGCGATTTCTCCATCTATGGCGTCGCGTCCATCAT AAAGGATCATGATGGACGCTTGATCTACGCGGGCGGCGACGATGTCTACGCATTTCTCCCTATCGGCTCTGCACTGCCGG CGGCACGTAAAATCAGAGATTACTACACATCCATATTTCGCTATGTAAGTATGGATCGCACATCTAAGCCGATTACAGAG AAAGAATGGATGCCCGAACGAGGAAAGCTTTCCGTAAATCTCGGCATCGGCAATGAAATATCCATATCCGCCGCCATTCT AATTTGTCACCACAAGGAAAGCCTTACCCAAATGATTGAACGGGCACATCAATTATTACAATCGCAAGCAAAGGATAAGG CTGAACGTAATGCATGCGCGATTGAACTGCGAAAACGTCACGGCGGCTCCCGTTATTTCACAAGGAAGTGGGCAGATAAA GAAACCTGGGACGCTTTCGAATTCATTGGGAAGATGACGGAAGAGAATCATCGCCAAGTTTCCCGCTCCCTTTTGTATCG TCTCGAAACCCTACGGCCCGGCATCGAAGCAATTATGATACAAGACACGAAGGCGGAGGAAAATCTGAACGCGTTCATAG CAAAACAAATCGAACGATCGGGTACTGAATCATTGGAAAATAAAGAACTCATAGCCCGTTCGATCGCCTACATCGTATGG GACAAGAACAATCATAAAAACCCTTTCAATCCAGAGGGATTGATGATTGCCGACTTTCTTGGAGGTTAG
Upstream 100 bases:
>100_bases TGCCCTATGAGTACTACGATGAAAAGAAACGACAAGATTACTTTAGGTTATGTAATAAAGTGAACGAGATACTAAAAAAA TAATTTAGTGGAGACATAAA
Downstream 100 bases:
>100_bases GAAGGAAATGACTGATTGGTACAGTTTCAAGCCACAAGACACGTTATATTTCCGCGGTGCGGAACCGGCAAACATGGGTG AAAGTCATGCGGCATCCATG
Product: HD superfamily hydrolase
Products: NA
Alternate protein names: CRISPR-Associated RAMP Crm2 Family Protein; Crm2 Family CRISPR-Associated Protein; CRISPR-Associated Protein; HD Superfamily Hydrolase; Crispr-Associated Protein Crm2 Family; HD Family Hydrolase; CRISPR-Associated Cmr2 Family Protein; Hydrolase
Number of amino acids: Translated: 902; Mature: 901
Protein sequence:
>902_residues MTWQIPDTSYWENKFAAYWHDPIDKVISIQNHEERAADYLQIFGIDRPNDEFWQMADAIAAGFERGQVPSHSTDDTKNGA VDFAESPVITHPTTGKKGLLKITGVKMHINDLHAAIMEFLGKHIGKEAGNGDYADCFKGDYARFAVARFLYTHLVLRFIL AEKNIGGLGALWHRIPADSRFPDHSIWQHNALCSAISSCVELGGRAEEVSLMVFSITPVQGFIARARKMRDYWTGSVLLS WLAFEGLRWVMENLGADHILYPSLIDQPLVNNYLEKEWNVSGPFKPEIWNNQPNEIASLPNKFLFLIPFGKADEIAAELE KAISEKWAAVADKVAAYLIDRISMGNDGREHIQEMFKRQTSGFWDFQWAATRLADYTDKKELESLLDETQWKDQFAYMEA IQPILNKKGYSSENTSRGILYSTSHSLVQSALAAEKSIRSVARTEEPGEKCQMCSEFEVLHSKQWNGEVAGHYADHLKEF WSQLNPEQKDDVDFKENERLCSVCLIKRLAPHILKNSNDHILCNVFRSIDNVPSTTEMALHNYFQRFGITDKKDQRVIAQ KLHKDEEHVRGEKIDNRDKYYALLMMDGDNMGKLINGETIASCWKKIMHPQIAERLTGVDFYPLYRDVWQKIYGNAGLNK RLVTPAIHAAISEALGDFSIYGVASIIKDHDGRLIYAGGDDVYAFLPIGSALPAARKIRDYYTSIFRYVSMDRTSKPITE KEWMPERGKLSVNLGIGNEISISAAILICHHKESLTQMIERAHQLLQSQAKDKAERNACAIELRKRHGGSRYFTRKWADK ETWDAFEFIGKMTEENHRQVSRSLLYRLETLRPGIEAIMIQDTKAEENLNAFIAKQIERSGTESLENKELIARSIAYIVW DKNNHKNPFNPEGLMIADFLGG
Sequences:
>Translated_902_residues MTWQIPDTSYWENKFAAYWHDPIDKVISIQNHEERAADYLQIFGIDRPNDEFWQMADAIAAGFERGQVPSHSTDDTKNGA VDFAESPVITHPTTGKKGLLKITGVKMHINDLHAAIMEFLGKHIGKEAGNGDYADCFKGDYARFAVARFLYTHLVLRFIL AEKNIGGLGALWHRIPADSRFPDHSIWQHNALCSAISSCVELGGRAEEVSLMVFSITPVQGFIARARKMRDYWTGSVLLS WLAFEGLRWVMENLGADHILYPSLIDQPLVNNYLEKEWNVSGPFKPEIWNNQPNEIASLPNKFLFLIPFGKADEIAAELE KAISEKWAAVADKVAAYLIDRISMGNDGREHIQEMFKRQTSGFWDFQWAATRLADYTDKKELESLLDETQWKDQFAYMEA IQPILNKKGYSSENTSRGILYSTSHSLVQSALAAEKSIRSVARTEEPGEKCQMCSEFEVLHSKQWNGEVAGHYADHLKEF WSQLNPEQKDDVDFKENERLCSVCLIKRLAPHILKNSNDHILCNVFRSIDNVPSTTEMALHNYFQRFGITDKKDQRVIAQ KLHKDEEHVRGEKIDNRDKYYALLMMDGDNMGKLINGETIASCWKKIMHPQIAERLTGVDFYPLYRDVWQKIYGNAGLNK RLVTPAIHAAISEALGDFSIYGVASIIKDHDGRLIYAGGDDVYAFLPIGSALPAARKIRDYYTSIFRYVSMDRTSKPITE KEWMPERGKLSVNLGIGNEISISAAILICHHKESLTQMIERAHQLLQSQAKDKAERNACAIELRKRHGGSRYFTRKWADK ETWDAFEFIGKMTEENHRQVSRSLLYRLETLRPGIEAIMIQDTKAEENLNAFIAKQIERSGTESLENKELIARSIAYIVW DKNNHKNPFNPEGLMIADFLGG >Mature_901_residues TWQIPDTSYWENKFAAYWHDPIDKVISIQNHEERAADYLQIFGIDRPNDEFWQMADAIAAGFERGQVPSHSTDDTKNGAV DFAESPVITHPTTGKKGLLKITGVKMHINDLHAAIMEFLGKHIGKEAGNGDYADCFKGDYARFAVARFLYTHLVLRFILA EKNIGGLGALWHRIPADSRFPDHSIWQHNALCSAISSCVELGGRAEEVSLMVFSITPVQGFIARARKMRDYWTGSVLLSW LAFEGLRWVMENLGADHILYPSLIDQPLVNNYLEKEWNVSGPFKPEIWNNQPNEIASLPNKFLFLIPFGKADEIAAELEK AISEKWAAVADKVAAYLIDRISMGNDGREHIQEMFKRQTSGFWDFQWAATRLADYTDKKELESLLDETQWKDQFAYMEAI QPILNKKGYSSENTSRGILYSTSHSLVQSALAAEKSIRSVARTEEPGEKCQMCSEFEVLHSKQWNGEVAGHYADHLKEFW SQLNPEQKDDVDFKENERLCSVCLIKRLAPHILKNSNDHILCNVFRSIDNVPSTTEMALHNYFQRFGITDKKDQRVIAQK LHKDEEHVRGEKIDNRDKYYALLMMDGDNMGKLINGETIASCWKKIMHPQIAERLTGVDFYPLYRDVWQKIYGNAGLNKR LVTPAIHAAISEALGDFSIYGVASIIKDHDGRLIYAGGDDVYAFLPIGSALPAARKIRDYYTSIFRYVSMDRTSKPITEK EWMPERGKLSVNLGIGNEISISAAILICHHKESLTQMIERAHQLLQSQAKDKAERNACAIELRKRHGGSRYFTRKWADKE TWDAFEFIGKMTEENHRQVSRSLLYRLETLRPGIEAIMIQDTKAEENLNAFIAKQIERSGTESLENKELIARSIAYIVWD KNNHKNPFNPEGLMIADFLGG
Specific function: Unknown
COG id: COG1353
COG function: function code R; Predicted hydrolase of the HD superfamily (permuted catalytic motifs)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102863; Mature: 102732
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWQIPDTSYWENKFAAYWHDPIDKVISIQNHEERAADYLQIFGIDRPNDEFWQMADAIA CCCCCCCCCHHCCCHHHHHHCHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH AGFERGQVPSHSTDDTKNGAVDFAESPVITHPTTGKKGLLKITGVKMHINDLHAAIMEFL HHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEHHHHHHHHHHHH GKHIGKEAGNGDYADCFKGDYARFAVARFLYTHLVLRFILAEKNIGGLGALWHRIPADSR HHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC FPDHSIWQHNALCSAISSCVELGGRAEEVSLMVFSITPVQGFIARARKMRDYWTGSVLLS CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH WLAFEGLRWVMENLGADHILYPSLIDQPLVNNYLEKEWNVSGPFKPEIWNNQPNEIASLP HHHHHHHHHHHHHCCCCCEECHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC NKFLFLIPFGKADEIAAELEKAISEKWAAVADKVAAYLIDRISMGNDGREHIQEMFKRQT CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SGFWDFQWAATRLADYTDKKELESLLDETQWKDQFAYMEAIQPILNKKGYSSENTSRGIL CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE YSTSHSLVQSALAAEKSIRSVARTEEPGEKCQMCSEFEVLHSKQWNGEVAGHYADHLKEF EECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH WSQLNPEQKDDVDFKENERLCSVCLIKRLAPHILKNSNDHILCNVFRSIDNVPSTTEMAL HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCHHHHHH HNYFQRFGITDKKDQRVIAQKLHKDEEHVRGEKIDNRDKYYALLMMDGDNMGKLINGETI HHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH ASCWKKIMHPQIAERLTGVDFYPLYRDVWQKIYGNAGLNKRLVTPAIHAAISEALGDFSI HHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHH YGVASIIKDHDGRLIYAGGDDVYAFLPIGSALPAARKIRDYYTSIFRYVSMDRTSKPITE HHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH KEWMPERGKLSVNLGIGNEISISAAILICHHKESLTQMIERAHQLLQSQAKDKAERNACA HHCCCCCCCEEEEECCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHH IELRKRHGGSRYFTRKWADKETWDAFEFIGKMTEENHRQVSRSLLYRLETLRPGIEAIMI HHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE QDTKAEENLNAFIAKQIERSGTESLENKELIARSIAYIVWDKNNHKNPFNPEGLMIADFL ECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEECCC GG CC >Mature Secondary Structure TWQIPDTSYWENKFAAYWHDPIDKVISIQNHEERAADYLQIFGIDRPNDEFWQMADAIA CCCCCCCCHHCCCHHHHHHCHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH AGFERGQVPSHSTDDTKNGAVDFAESPVITHPTTGKKGLLKITGVKMHINDLHAAIMEFL HHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEHHHHHHHHHHHH GKHIGKEAGNGDYADCFKGDYARFAVARFLYTHLVLRFILAEKNIGGLGALWHRIPADSR HHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC FPDHSIWQHNALCSAISSCVELGGRAEEVSLMVFSITPVQGFIARARKMRDYWTGSVLLS CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH WLAFEGLRWVMENLGADHILYPSLIDQPLVNNYLEKEWNVSGPFKPEIWNNQPNEIASLP HHHHHHHHHHHHHCCCCCEECHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC NKFLFLIPFGKADEIAAELEKAISEKWAAVADKVAAYLIDRISMGNDGREHIQEMFKRQT CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SGFWDFQWAATRLADYTDKKELESLLDETQWKDQFAYMEAIQPILNKKGYSSENTSRGIL CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE YSTSHSLVQSALAAEKSIRSVARTEEPGEKCQMCSEFEVLHSKQWNGEVAGHYADHLKEF EECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH WSQLNPEQKDDVDFKENERLCSVCLIKRLAPHILKNSNDHILCNVFRSIDNVPSTTEMAL HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCHHHHHH HNYFQRFGITDKKDQRVIAQKLHKDEEHVRGEKIDNRDKYYALLMMDGDNMGKLINGETI HHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH ASCWKKIMHPQIAERLTGVDFYPLYRDVWQKIYGNAGLNKRLVTPAIHAAISEALGDFSI HHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHH YGVASIIKDHDGRLIYAGGDDVYAFLPIGSALPAARKIRDYYTSIFRYVSMDRTSKPITE HHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH KEWMPERGKLSVNLGIGNEISISAAILICHHKESLTQMIERAHQLLQSQAKDKAERNACA HHCCCCCCCEEEEECCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHH IELRKRHGGSRYFTRKWADKETWDAFEFIGKMTEENHRQVSRSLLYRLETLRPGIEAIMI HHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE QDTKAEENLNAFIAKQIERSGTESLENKELIARSIAYIVWDKNNHKNPFNPEGLMIADFL ECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEECCC GG CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA