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The map label for this gene is pqqE [H]

Identifier: 85858423

GI number: 85858423

Start: 573934

End: 575127

Strand: Direct

Name: pqqE [H]

Synonym: SYN_02268

Alternate gene names: 85858423

Gene position: 573934-575127 (Clockwise)

Preceding gene: 85858422

Following gene: 85858424

Centisome position: 18.05

GC content: 59.63

Gene sequence:

>1194_bases
ATGATTGGTATTTCCAAGCTATACTGCGGGGCGGTGGAGCCCGCGGATGTGCTGCGGTACAACCGGGAATCGAGCCGGCT
GCCTTCCCATCTGCTCCAGTTTTCTATGGACAAACGGCCGGTTGTTGTCTGGAACATGACCCGACGGTGCAATCTGAGGT
GCATTCATTGCTATTCCAGTTCTCAGAACATCCAGTACAGCGATGAGATGACGACGGCCGAGGCAGAAGAGATGATCGAG
GATCTGGCTGCCTTCGGTTGTCCCGTCCTTCTCTTTTCCGGGGGAGAGCCCCTCATGAGGGAAGACCTTCCGGAGCTAGC
GCAATACGCCGTATCTCGAGGCATGCGGGCGGTCCTGTCCACCAACGGGACTCTGCTGACCCGGGAAAAGGCGTCCGTTT
TCAAAAAAATCGGCCTGTCTTATATCGGCGTCAGTCTGGATGGCCTCCAGGCGACGCATGACCGCTTCCGGGGCGTTGCC
GGGGCTTACGAAGCCGCGATGAAAGGCATCCGCATCTGCCGGGAAGAAGGGATCAAGGTAGGGGTGCGCTTTACCATCAA
TCGAAAAAATGCCGCCGATATTCCCGCCATTTTCGATCTGCTGGAGGCGGAGGATATTCCCCGGGTCTGTTTCTACCATC
TGGTCTATTCCGGACGGGGGTCTGCCCTGGTCGCCGAGGATCTGTCTCACGAGGAAACCCGGCGGACCGTCGACCTCATC
CTGGACCGGACCCGCGATCTTTTCGAGCGGGGGCTGCCCAAAGAGGTGCTCACCGTCGATAATCATGCCGATGGCCCTTA
CCTGTACCTCCGGATGCTGAAGGAAGACCCGAGGCGGGCGGCTGAAGTCCTGGAACTGCTGAAGATGAATGAAGGAAACA
GCTCCGGCAACGGCATCGGCTGCGTTAGCTGGGACGGCGAAGTGCATCCCGATCAGTTCTGGCGGGGAATATCCCTCGGC
AATGTGCGCCGTAGACCCTTCAGCGGGATCTGGACCGATCCGACCAATGACCTGTTGACCCGCCTCAAGGACAAGAAACC
TCATCTGCAGGGACGCTGTGCGGCCTGCCGCTGGCTGGACGTCTGCGGCGGAAATTTCCGCGCCCGGGCGGAAGCGGTGA
CGGGCGACCTCTGGGCTCCGGACCCGGCCTGCTATCTGACGGACAAAGAGATTTCGCCGTCGGTGGATTCCTGA

Upstream 100 bases:

>100_bases
TCACGGTTTCCCGGAACAGGGCACTGCTTAAAGGTTAAGGTCGATCGGTCTGTCCGAAAGACTCAAAAGGCCGGTTTAAT
AATATAAAGAAGGTTAAAAG

Downstream 100 bases:

>100_bases
CCATAAAAAAGAAAAAACTCCTGAGGATATCTATTGATCAGGGGCGATGAAAAACGGCCTTTGCATGAGACATGCAACCG
TAGTTATATATTGAGGAAGT

Product: radical SAM protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MIGISKLYCGAVEPADVLRYNRESSRLPSHLLQFSMDKRPVVVWNMTRRCNLRCIHCYSSSQNIQYSDEMTTAEAEEMIE
DLAAFGCPVLLFSGGEPLMREDLPELAQYAVSRGMRAVLSTNGTLLTREKASVFKKIGLSYIGVSLDGLQATHDRFRGVA
GAYEAAMKGIRICREEGIKVGVRFTINRKNAADIPAIFDLLEAEDIPRVCFYHLVYSGRGSALVAEDLSHEETRRTVDLI
LDRTRDLFERGLPKEVLTVDNHADGPYLYLRMLKEDPRRAAEVLELLKMNEGNSSGNGIGCVSWDGEVHPDQFWRGISLG
NVRRRPFSGIWTDPTNDLLTRLKDKKPHLQGRCAACRWLDVCGGNFRARAEAVTGDLWAPDPACYLTDKEISPSVDS

Sequences:

>Translated_397_residues
MIGISKLYCGAVEPADVLRYNRESSRLPSHLLQFSMDKRPVVVWNMTRRCNLRCIHCYSSSQNIQYSDEMTTAEAEEMIE
DLAAFGCPVLLFSGGEPLMREDLPELAQYAVSRGMRAVLSTNGTLLTREKASVFKKIGLSYIGVSLDGLQATHDRFRGVA
GAYEAAMKGIRICREEGIKVGVRFTINRKNAADIPAIFDLLEAEDIPRVCFYHLVYSGRGSALVAEDLSHEETRRTVDLI
LDRTRDLFERGLPKEVLTVDNHADGPYLYLRMLKEDPRRAAEVLELLKMNEGNSSGNGIGCVSWDGEVHPDQFWRGISLG
NVRRRPFSGIWTDPTNDLLTRLKDKKPHLQGRCAACRWLDVCGGNFRARAEAVTGDLWAPDPACYLTDKEISPSVDS
>Mature_397_residues
MIGISKLYCGAVEPADVLRYNRESSRLPSHLLQFSMDKRPVVVWNMTRRCNLRCIHCYSSSQNIQYSDEMTTAEAEEMIE
DLAAFGCPVLLFSGGEPLMREDLPELAQYAVSRGMRAVLSTNGTLLTREKASVFKKIGLSYIGVSLDGLQATHDRFRGVA
GAYEAAMKGIRICREEGIKVGVRFTINRKNAADIPAIFDLLEAEDIPRVCFYHLVYSGRGSALVAEDLSHEETRRTVDLI
LDRTRDLFERGLPKEVLTVDNHADGPYLYLRMLKEDPRRAAEVLELLKMNEGNSSGNGIGCVSWDGEVHPDQFWRGISLG
NVRRRPFSGIWTDPTNDLLTRLKDKKPHLQGRCAACRWLDVCGGNFRARAEAVTGDLWAPDPACYLTDKEISPSVDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44452; Mature: 44452

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGISKLYCGAVEPADVLRYNRESSRLPSHLLQFSMDKRPVVVWNMTRRCNLRCIHCYSS
CCCCCHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECC
SQNIQYSDEMTTAEAEEMIEDLAAFGCPVLLFSGGEPLMREDLPELAQYAVSRGMRAVLS
CCCCEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHC
TNGTLLTREKASVFKKIGLSYIGVSLDGLQATHDRFRGVAGAYEAAMKGIRICREEGIKV
CCCCEEEHHHHHHHHHHCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
GVRFTINRKNAADIPAIFDLLEAEDIPRVCFYHLVYSGRGSALVAEDLSHEETRRTVDLI
EEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHCCHHHHHHHHHHH
LDRTRDLFERGLPKEVLTVDNHADGPYLYLRMLKEDPRRAAEVLELLKMNEGNSSGNGIG
HHHHHHHHHCCCCHHEEEECCCCCCCEEEHHHHHHCHHHHHHHHHHHHCCCCCCCCCEEE
CVSWDGEVHPDQFWRGISLGNVRRRPFSGIWTDPTNDLLTRLKDKKPHLQGRCAACRWLD
EEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
VCGGNFRARAEAVTGDLWAPDPACYLTDKEISPSVDS
HCCCCCEEEHHHHCCCCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MIGISKLYCGAVEPADVLRYNRESSRLPSHLLQFSMDKRPVVVWNMTRRCNLRCIHCYSS
CCCCCHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECC
SQNIQYSDEMTTAEAEEMIEDLAAFGCPVLLFSGGEPLMREDLPELAQYAVSRGMRAVLS
CCCCEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHC
TNGTLLTREKASVFKKIGLSYIGVSLDGLQATHDRFRGVAGAYEAAMKGIRICREEGIKV
CCCCEEEHHHHHHHHHHCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
GVRFTINRKNAADIPAIFDLLEAEDIPRVCFYHLVYSGRGSALVAEDLSHEETRRTVDLI
EEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHCCHHHHHHHHHHH
LDRTRDLFERGLPKEVLTVDNHADGPYLYLRMLKEDPRRAAEVLELLKMNEGNSSGNGIG
HHHHHHHHHCCCCHHEEEECCCCCCCEEEHHHHHHCHHHHHHHHHHHHCCCCCCCCCEEE
CVSWDGEVHPDQFWRGISLGNVRRRPFSGIWTDPTNDLLTRLKDKKPHLQGRCAACRWLD
EEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
VCGGNFRARAEAVTGDLWAPDPACYLTDKEISPSVDS
HCCCCCEEEHHHHCCCCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA