Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is 85858127

Identifier: 85858127

GI number: 85858127

Start: 293901

End: 294317

Strand: Direct

Name: 85858127

Synonym: SYN_00076

Alternate gene names: NA

Gene position: 293901-294317 (Clockwise)

Preceding gene: 85858125

Following gene: 85858128

Centisome position: 9.24

GC content: 44.84

Gene sequence:

>417_bases
TTGATTATTTATGATCTGAAATGTGAAAATGGGCATAAGTTCGAAGGATGGTTCAGGGACAGAAAGGCCTTTGAAGAACA
GAAGGCGCAGAGGTTGATTGCCTGTCCCGTCTGTGGAAGTTCAAACTCGGAGTTATTGCCTTCTTTTCCGAGGATCATGA
GCCGGGAGGGAGAAAATGCCTCAGGAAAGGATGCCAGAGAAATCAGTCCCCTGAAACTCCTGCATAAAATTCAGAAATAC
GTCAGCAAGAATTTTGAAGACGTCGGTGAGCGGTTTGCGGAAACCGCGCTGAATATCCATCATGGCAAAGAAGATCCGAG
AAATATTAAAGGGACTACAACACAGCAGGAGGAGGACGTCTTGAAAGAAGAAGGTATACCGTTTTTTAAAATTCCCCTCC
CCAAGTTGGACAGTTAA

Upstream 100 bases:

>100_bases
ACTGAATTTTTCCTGGTATCCATCTTGTTCCTGCTCTATTGTTTTTTGCTTTTCAACATGATATTTATTGATGAAATAGA
GAAATAAAGGGGGACTATTC

Downstream 100 bases:

>100_bases
GGACCGGCAACCTTTTTCGATAATCTAAAATCACACCCGAAAACTTTCAAAAGCCAAAGTCCGTAGAGAATTGTTAGAGA
TGTCAGGCAAGCCCGTGCTT

Product: cytoplasmic protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MIIYDLKCENGHKFEGWFRDRKAFEEQKAQRLIACPVCGSSNSELLPSFPRIMSREGENASGKDAREISPLKLLHKIQKY
VSKNFEDVGERFAETALNIHHGKEDPRNIKGTTTQQEEDVLKEEGIPFFKIPLPKLDS

Sequences:

>Translated_138_residues
MIIYDLKCENGHKFEGWFRDRKAFEEQKAQRLIACPVCGSSNSELLPSFPRIMSREGENASGKDAREISPLKLLHKIQKY
VSKNFEDVGERFAETALNIHHGKEDPRNIKGTTTQQEEDVLKEEGIPFFKIPLPKLDS
>Mature_138_residues
MIIYDLKCENGHKFEGWFRDRKAFEEQKAQRLIACPVCGSSNSELLPSFPRIMSREGENASGKDAREISPLKLLHKIQKY
VSKNFEDVGERFAETALNIHHGKEDPRNIKGTTTQQEEDVLKEEGIPFFKIPLPKLDS

Specific function: Unknown

COG id: COG5319

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15818; Mature: 15818

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIYDLKCENGHKFEGWFRDRKAFEEQKAQRLIACPVCGSSNSELLPSFPRIMSREGENA
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHCCCCCC
SGKDAREISPLKLLHKIQKYVSKNFEDVGERFAETALNIHHGKEDPRNIKGTTTQQEEDV
CCCCCHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
LKEEGIPFFKIPLPKLDS
HHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MIIYDLKCENGHKFEGWFRDRKAFEEQKAQRLIACPVCGSSNSELLPSFPRIMSREGENA
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHCCCCCC
SGKDAREISPLKLLHKIQKYVSKNFEDVGERFAETALNIHHGKEDPRNIKGTTTQQEEDV
CCCCCHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
LKEEGIPFFKIPLPKLDS
HHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA