| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is pvuIIM [H]
Identifier: 85857855
GI number: 85857855
Start: 12576
End: 13454
Strand: Direct
Name: pvuIIM [H]
Synonym: SYN_02042
Alternate gene names: 85857855
Gene position: 12576-13454 (Clockwise)
Preceding gene: 85857854
Following gene: 85857856
Centisome position: 0.4
GC content: 39.82
Gene sequence:
>879_bases ATGGAAGTAACTACAGATATATATCTTGGGGATAGCAGGGAACAACTAAAACTGCTTCCAGATGATTCTGTCGACCTGAT AGTGACGTCTCCGCCTTACGCAGATCAGCGTAAAAATACATATGGCGGCATCCATCCTGATAAATACGTTAATTGGTTCT TGCCTATTTCAGTACAGCTTTTACGTGTTCTCAAGCCGACGGGAACCTTTATTTTAAACATCAAAGAAAAAGTAGTCGAG GGCGAGCGCAGCACTTACGTAATGGAGCTCATATTAGAAATGCGCAAACAGGGATGGCTATGGACGGAAGAGTTTATTTG GCATAAGAAAAATTGCTACCCAGGAAAATGGCCTAATCGTTTTCGCGATGCCTGGGAGAGACTTCTTCAGTTTAATAAAA ATCGAAAATTTCATATGTATCAGGAAGAAGTAATGGTTCAAATGGGCGAATGGGCAAACTCAAGACTGAAAAACCTTTCT GAGACAGACAAAATCCGTGACAACTCAAAAGTAGGAAGCGGATTTGGTAAAAATATTTCAAACTGGCTTGAAAGAGATAA GGCATATCCCACAAATGTTTTGCACTTGGCTACCGAATGTAACAACAAAAACCATAGCGCGGCTTTTCCTGAAGGGTTGC CTGAATGGTTTATTAAACTTTTTACAAAAGAAAAAGATACGGTTCTTGATCCCTTTATGGGTTCAGGGACAACACTGATT GTCGCTAACAGAATGAGGCGAAATTCAATAGGAATCGACATCGTTCCAGAGTATTGTGAAATGGTAAAAAAGCAATTGAA AGCGGTAGAGTTATATCTATTGGAACCAAAGGCGGAATATGAAAAAACTAGGGTTGAAAAGCGTATCACAATACGTTGA
Upstream 100 bases:
>100_bases CATAACGAGACGCCAGAGCCGATCGCAGCCCGCGGGACTGCTCCGGCTCAGCTTTTCATTAGACGTATGGTGAAAACACT TTTATATTAAGCGAGATCAA
Downstream 100 bases:
>100_bases ACAAAACATAGGGACTTTTCATCAAAAGCGCATTCAAAGCCTTGATGGATTAAAGTTGTCGAATGTTCTTAAACGAAAAA ATCCATACTTATTTAAAGCA
Product: DNA modification methylase
Products: NA
Alternate protein names: M.PvuII; N-4 cytosine-specific methyltransferase PvuII [H]
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MEVTTDIYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYGGIHPDKYVNWFLPISVQLLRVLKPTGTFILNIKEKVVE GERSTYVMELILEMRKQGWLWTEEFIWHKKNCYPGKWPNRFRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLS ETDKIRDNSKVGSGFGKNISNWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLDPFMGSGTTLI VANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRITIR
Sequences:
>Translated_292_residues MEVTTDIYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYGGIHPDKYVNWFLPISVQLLRVLKPTGTFILNIKEKVVE GERSTYVMELILEMRKQGWLWTEEFIWHKKNCYPGKWPNRFRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLS ETDKIRDNSKVGSGFGKNISNWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLDPFMGSGTTLI VANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRITIR >Mature_292_residues MEVTTDIYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYGGIHPDKYVNWFLPISVQLLRVLKPTGTFILNIKEKVVE GERSTYVMELILEMRKQGWLWTEEFIWHKKNCYPGKWPNRFRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLS ETDKIRDNSKVGSGFGKNISNWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLDPFMGSGTTLI VANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRITIR
Specific function: This methylase recognizes the double-stranded sequence CAGCTG, causes specific methylation on C-4 on both strands, and protects the DNA from cleavage by the PvuII endonuclease [H]
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR017985 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.113 [H]
Molecular weight: Translated: 34356; Mature: 34356
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVTTDIYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYGGIHPDKYVNWFLPISVQL CCEEEEEEECCCHHHEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHEEEEEHHHHHH LRVLKPTGTFILNIKEKVVEGERSTYVMELILEMRKQGWLWTEEFIWHKKNCYPGKWPNR HHHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCCCCHH FRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLSETDKIRDNSKVGSGFGKNIS HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHH NWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLDPFMGSGTTLI HHHHHHCCCCCHHEEEEHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE VANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRITIR EEECHHHCCCCCEECHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCC >Mature Secondary Structure MEVTTDIYLGDSREQLKLLPDDSVDLIVTSPPYADQRKNTYGGIHPDKYVNWFLPISVQL CCEEEEEEECCCHHHEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHEEEEEHHHHHH LRVLKPTGTFILNIKEKVVEGERSTYVMELILEMRKQGWLWTEEFIWHKKNCYPGKWPNR HHHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCCCCHH FRDAWERLLQFNKNRKFHMYQEEVMVQMGEWANSRLKNLSETDKIRDNSKVGSGFGKNIS HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHH NWLERDKAYPTNVLHLATECNNKNHSAAFPEGLPEWFIKLFTKEKDTVLDPFMGSGTTLI HHHHHHCCCCCHHEEEEHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE VANRMRRNSIGIDIVPEYCEMVKKQLKAVELYLLEPKAEYEKTRVEKRITIR EEECHHHCCCCCEECHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2662138; 7607491; 9207015 [H]