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The map label for this gene is yfdE [H]

Identifier: 85372838

GI number: 85372838

Start: 20396

End: 21544

Strand: Direct

Name: yfdE [H]

Synonym: ELI_00055

Alternate gene names: 85372838

Gene position: 20396-21544 (Clockwise)

Preceding gene: 85372837

Following gene: 85372839

Centisome position: 0.67

GC content: 65.8

Gene sequence:

>1149_bases
ATGGCGGGTCCGCTCAACGGCATCCGCATCGTCGAATTCGCCGGGATCGGGCCGGGTCCGTTCTGCGGCATGATGCTGGC
CGACCACGGCGCGGAGGTGATCCGCATCGACCGCGCCAGCGGATCGCGCGGCGGGTCGCAACCAGTCACCAGCAAGGATG
TCTTGGCGCGCGGGCGCAAGTCGATCGCCGTAGACTTGAAGAGCGCTGAGGGCGTCGCGCTCGCCCGCAAGCTCGCCGCC
AGCGCCGACGGCATCATCGAGGGCTTCCGCCCCGGCGTGATGGAGCGGCTTGGGCTGGGACCGGACGAGCTGCTCAAGGA
CAATCCCAAGCTGGTCTATGGCCGGATGACAGGCTGGGGCCAGACCGGCCCCTATGCGCCCTGGGCCGGACATGACATCA
ACTATATCGCGCTGGCCGGAGCGCTGGCGCACTACGGCCGCGCGGGCGGCAAACCAACTCCGCCGATCAACATGGTCGGC
GATTTCGGCGGCGGCGGCATGATGCTCGCATTCGGCATGGTCTCCGCGCTGCTCAACGTAGCGCGGGGCGGCGAGGGGCA
GGTGATCGACTGCGCCATGACCGACGGAACGGCGGTGCTGATGTCCATGATGCACGGCATGAAAAACATGGGTGTCTGGT
CGGAAGAGCTGGGCGTCAACCTGCTCGATACCGGCGCGCATTTCTATGATACCTACGAGACCGCCGACGGCAAGTTCATC
TCCATCGGCAGCATCGAACCGCAATTCTATGCCGAGCTGCGCAAGCTCGCCGGGCTGGAGGACGATACCCAATTCGATGC
CCAGCACGACCGCGCGCAATGGGGGGCAATGAAGGACAAGCTCACCGTTCTGTTCAAGACCAGGACGCGGGATGAGTGGA
ACGCGACCATGGAGCATACCGACGTCTGCTACGCGCCGGTGCTGACCATGAGCGAGGCAGCGCAGCATCCGCATAATGTC
GCGCGCGAGACCTTCATTGAGGTCGGCGGCGACACCCAACCAGCGCCCGCACCGCGCTATTCCGGCACTGCCAATGCCAA
TCCCGAACCCGCCCCGATGCCAGGCGATGATACCGATGCGATCCTCAGCTCGCTGGGGATCGAAGCCGACGAAGCCGCTG
CCCTGCGCGACGCGGGCACTGTGGGCTGA

Upstream 100 bases:

>100_bases
AGGGCAAGCTGATGCCGCAGATATTCATGAGCGAAGATGCACGTGAAGGCGCGGCAGCCTTCGCGGAAAAGCGCGCGCCC
AACTGGAAGGGCAAGTAACG

Downstream 100 bases:

>100_bases
CGCACCGAACAACCAAGGACCAATCCGATGCTCGATACCTCCCAACGCTTCGCCTATAATGAAGACCACGAGATGTTCCG
CGACACCGTGCGCAAGGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MAGPLNGIRIVEFAGIGPGPFCGMMLADHGAEVIRIDRASGSRGGSQPVTSKDVLARGRKSIAVDLKSAEGVALARKLAA
SADGIIEGFRPGVMERLGLGPDELLKDNPKLVYGRMTGWGQTGPYAPWAGHDINYIALAGALAHYGRAGGKPTPPINMVG
DFGGGGMMLAFGMVSALLNVARGGEGQVIDCAMTDGTAVLMSMMHGMKNMGVWSEELGVNLLDTGAHFYDTYETADGKFI
SIGSIEPQFYAELRKLAGLEDDTQFDAQHDRAQWGAMKDKLTVLFKTRTRDEWNATMEHTDVCYAPVLTMSEAAQHPHNV
ARETFIEVGGDTQPAPAPRYSGTANANPEPAPMPGDDTDAILSSLGIEADEAAALRDAGTVG

Sequences:

>Translated_382_residues
MAGPLNGIRIVEFAGIGPGPFCGMMLADHGAEVIRIDRASGSRGGSQPVTSKDVLARGRKSIAVDLKSAEGVALARKLAA
SADGIIEGFRPGVMERLGLGPDELLKDNPKLVYGRMTGWGQTGPYAPWAGHDINYIALAGALAHYGRAGGKPTPPINMVG
DFGGGGMMLAFGMVSALLNVARGGEGQVIDCAMTDGTAVLMSMMHGMKNMGVWSEELGVNLLDTGAHFYDTYETADGKFI
SIGSIEPQFYAELRKLAGLEDDTQFDAQHDRAQWGAMKDKLTVLFKTRTRDEWNATMEHTDVCYAPVLTMSEAAQHPHNV
ARETFIEVGGDTQPAPAPRYSGTANANPEPAPMPGDDTDAILSSLGIEADEAAALRDAGTVG
>Mature_381_residues
AGPLNGIRIVEFAGIGPGPFCGMMLADHGAEVIRIDRASGSRGGSQPVTSKDVLARGRKSIAVDLKSAEGVALARKLAAS
ADGIIEGFRPGVMERLGLGPDELLKDNPKLVYGRMTGWGQTGPYAPWAGHDINYIALAGALAHYGRAGGKPTPPINMVGD
FGGGGMMLAFGMVSALLNVARGGEGQVIDCAMTDGTAVLMSMMHGMKNMGVWSEELGVNLLDTGAHFYDTYETADGKFIS
IGSIEPQFYAELRKLAGLEDDTQFDAQHDRAQWGAMKDKLTVLFKTRTRDEWNATMEHTDVCYAPVLTMSEAAQHPHNVA
RETFIEVGGDTQPAPAPRYSGTANANPEPAPMPGDDTDAILSSLGIEADEAAALRDAGTVG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=373, Percent_Identity=43.6997319034853, Blast_Score=318, Evalue=5e-87,
Organism=Homo sapiens, GI266456254, Length=373, Percent_Identity=43.6997319034853, Blast_Score=318, Evalue=6e-87,
Organism=Homo sapiens, GI266458397, Length=267, Percent_Identity=47.1910112359551, Blast_Score=258, Evalue=7e-69,
Organism=Homo sapiens, GI266458393, Length=279, Percent_Identity=45.5197132616487, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI300863128, Length=404, Percent_Identity=28.7128712871287, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=49.2647058823529, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=49.2647058823529, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI300863124, Length=430, Percent_Identity=27.2093023255814, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI300863126, Length=398, Percent_Identity=26.6331658291457, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI13376042, Length=430, Percent_Identity=24.8837209302326, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI87082093, Length=371, Percent_Identity=29.3800539083558, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1788717, Length=420, Percent_Identity=26.1904761904762, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=26.6331658291457, Blast_Score=90, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=350, Percent_Identity=36.2857142857143, Blast_Score=226, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI32564160, Length=338, Percent_Identity=35.5029585798817, Blast_Score=222, Evalue=3e-58,
Organism=Drosophila melanogaster, GI24585488, Length=382, Percent_Identity=42.6701570680628, Blast_Score=303, Evalue=2e-82,
Organism=Drosophila melanogaster, GI24648431, Length=409, Percent_Identity=29.5843520782396, Blast_Score=126, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40309; Mature: 40178

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPLNGIRIVEFAGIGPGPFCGMMLADHGAEVIRIDRASGSRGGSQPVTSKDVLARGRK
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
SIAVDLKSAEGVALARKLAASADGIIEGFRPGVMERLGLGPDELLKDNPKLVYGRMTGWG
EEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCCEEEEECCCCC
QTGPYAPWAGHDINYIALAGALAHYGRAGGKPTPPINMVGDFGGGGMMLAFGMVSALLNV
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
ARGGEGQVIDCAMTDGTAVLMSMMHGMKNMGVWSEELGVNLLDTGAHFYDTYETADGKFI
HCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCEEEECCCHHEECEECCCCCEE
SIGSIEPQFYAELRKLAGLEDDTQFDAQHDRAQWGAMKDKLTVLFKTRTRDEWNATMEHT
EECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHCCEEEEEEECCCCCCCCHHHHC
DVCYAPVLTMSEAAQHPHNVARETFIEVGGDTQPAPAPRYSGTANANPEPAPMPGDDTDA
CHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
ILSSLGIEADEAAALRDAGTVG
HHHHHCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
AGPLNGIRIVEFAGIGPGPFCGMMLADHGAEVIRIDRASGSRGGSQPVTSKDVLARGRK
CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
SIAVDLKSAEGVALARKLAASADGIIEGFRPGVMERLGLGPDELLKDNPKLVYGRMTGWG
EEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCCEEEEECCCCC
QTGPYAPWAGHDINYIALAGALAHYGRAGGKPTPPINMVGDFGGGGMMLAFGMVSALLNV
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
ARGGEGQVIDCAMTDGTAVLMSMMHGMKNMGVWSEELGVNLLDTGAHFYDTYETADGKFI
HCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCEEEECCCHHEECEECCCCCEE
SIGSIEPQFYAELRKLAGLEDDTQFDAQHDRAQWGAMKDKLTVLFKTRTRDEWNATMEHT
EECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHCCEEEEEEECCCCCCCCHHHHC
DVCYAPVLTMSEAAQHPHNVARETFIEVGGDTQPAPAPRYSGTANANPEPAPMPGDDTDA
CHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
ILSSLGIEADEAAALRDAGTVG
HHHHHCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]