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The map label for this gene is rffC [H]

Identifier: 85060357

GI number: 85060357

Start: 4083719

End: 4084480

Strand: Reverse

Name: rffC [H]

Synonym: SG2379

Alternate gene names: 85060357

Gene position: 4084480-4083719 (Counterclockwise)

Preceding gene: 85060358

Following gene: 85060356

Centisome position: 97.92

GC content: 63.52

Gene sequence:

>762_bases
ATGGACAATATCTGTTGGATCTGCTCAATGTCCGTCCACGCCAATACTGATCTCCTGACCTGGGAGAGCGACTTTTTTGG
CCGCCGTCTGGGCCGTGTCGCATTTGATGATGCCGCGCCCTGTCTGACGTCCGGGGGACTTACGGCGTTTGCGTTGGTGC
AGGCGAAAGTGGCGGCGCAGGCAACGGCGCAAATGGATGCGCTCAGCGCCCTAGGCTTTCGGCCGGTAGAAGGTGAAATA
GACTGCTGCTATACCTTGCCAGCCAGCTCCGGCGGTGCGCCCGTCGCGGCGTTGCCGGCGGCGGAAATGCGCGTGGCGGA
GGCCTCCGATATTCCCGCGCTGCGCGCGTTGGCGGCGCAGACGCTGACGCTGAGCCGCTTTCGGCCGCCGTGGTTTAGCG
ATGAGGAGCGCCAGCGTTTTTATGCCCAGTGGGTGGAAAACGCCGTGCGCGGCAGTTTTGATCATCTCTGCCTGGTGGCG
GACGGGCCCACCGGCCTGGAAGGGCTGGTGACGCTCAGGGATATCGGCGAACAAACGGCGCGTATCGGCCTGTTGGCGGT
GTCTTACGCCGCCCGCGGTCGCGGTACCGGCAAATTGCTGTGCCGCGCGGCGTTGGGCTGGTGTCGCAGTCGCGGCTTCA
GTCAACTGCGGGTGGCGACGCAAACCGCCAATCTGCCGGCGCTGCGGCTTTATCTGGCAAGCGGCGCGCAGATTGTGCAT
GCCGCGCATTGGTTATACCGAGGACCTCATGATTCCATTTAA

Upstream 100 bases:

>100_bases
GGGTTTAAAATCGCCTGTCTGGAGGAAATCGGTTGGCGCAACGGTTGGCTCGATGATGACGGCGCGCGGCGCGCGGCGCA
GGCACTGGCGAAAACCGGTT

Downstream 100 bases:

>100_bases
CGCGCCACCTGTGGTCGGTACCGAACTGGGCTTTATGCAGGCCGCCATGGGCAGCGGCAAGTTGTGCGGCGACGGCGGAT
TTACCCAGCGCTGCCAGCAA

Product: TDP-fucosamine acetyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDNICWICSMSVHANTDLLTWESDFFGRRLGRVAFDDAAPCLTSGGLTAFALVQAKVAAQATAQMDALSALGFRPVEGEI
DCCYTLPASSGGAPVAALPAAEMRVAEASDIPALRALAAQTLTLSRFRPPWFSDEERQRFYAQWVENAVRGSFDHLCLVA
DGPTGLEGLVTLRDIGEQTARIGLLAVSYAARGRGTGKLLCRAALGWCRSRGFSQLRVATQTANLPALRLYLASGAQIVH
AAHWLYRGPHDSI

Sequences:

>Translated_253_residues
MDNICWICSMSVHANTDLLTWESDFFGRRLGRVAFDDAAPCLTSGGLTAFALVQAKVAAQATAQMDALSALGFRPVEGEI
DCCYTLPASSGGAPVAALPAAEMRVAEASDIPALRALAAQTLTLSRFRPPWFSDEERQRFYAQWVENAVRGSFDHLCLVA
DGPTGLEGLVTLRDIGEQTARIGLLAVSYAARGRGTGKLLCRAALGWCRSRGFSQLRVATQTANLPALRLYLASGAQIVH
AAHWLYRGPHDSI
>Mature_253_residues
MDNICWICSMSVHANTDLLTWESDFFGRRLGRVAFDDAAPCLTSGGLTAFALVQAKVAAQATAQMDALSALGFRPVEGEI
DCCYTLPASSGGAPVAALPAAEMRVAEASDIPALRALAAQTLTLSRFRPPWFSDEERQRFYAQWVENAVRGSFDHLCLVA
DGPTGLEGLVTLRDIGEQTARIGLLAVSYAARGRGTGKLLCRAALGWCRSRGFSQLRVATQTANLPALRLYLASGAQIVH
AAHWLYRGPHDSI

Specific function: Transaminase converting thymidine diphosphate(TDP)-4- keto-6-deoxy-D-glucose to TDP-4-amino-4,6-dideoxy-D-galactose, the immediate precursor of the ECA sugar TDP-Fuc4NAc [H]

COG id: COG0454

COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 N-acetyltransferase domain [H]

Homologues:

Organism=Escherichia coli, GI145693203, Length=239, Percent_Identity=45.6066945606695, Blast_Score=197, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000182
- InterPro:   IPR012752
- InterPro:   IPR016181
- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00583 Acetyltransf_1 [H]

EC number: NA

Molecular weight: Translated: 27197; Mature: 27197

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNICWICSMSVHANTDLLTWESDFFGRRLGRVAFDDAAPCLTSGGLTAFALVQAKVAAQ
CCCEEEEEEEEEECCCEEEEECHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
ATAQMDALSALGFRPVEGEIDCCYTLPASSGGAPVAALPAAEMRVAEASDIPALRALAAQ
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHH
TLTLSRFRPPWFSDEERQRFYAQWVENAVRGSFDHLCLVADGPTGLEGLVTLRDIGEQTA
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
RIGLLAVSYAARGRGTGKLLCRAALGWCRSRGFSQLRVATQTANLPALRLYLASGAQIVH
HHHHHEEEHHHCCCCHHHHHHHHHHHHHHHCCCHHEEEEHHCCCCCEEEEEECCCCHHHH
AAHWLYRGPHDSI
HHHHHHCCCCCCC
>Mature Secondary Structure
MDNICWICSMSVHANTDLLTWESDFFGRRLGRVAFDDAAPCLTSGGLTAFALVQAKVAAQ
CCCEEEEEEEEEECCCEEEEECHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
ATAQMDALSALGFRPVEGEIDCCYTLPASSGGAPVAALPAAEMRVAEASDIPALRALAAQ
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHH
TLTLSRFRPPWFSDEERQRFYAQWVENAVRGSFDHLCLVADGPTGLEGLVTLRDIGEQTA
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
RIGLLAVSYAARGRGTGKLLCRAALGWCRSRGFSQLRVATQTANLPALRLYLASGAQIVH
HHHHHEEEHHHCCCCHHHHHHHHHHHHHHHCCCHHEEEEHHCCCCCEEEEEECCCCHHHH
AAHWLYRGPHDSI
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503; 8366065 [H]