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The map label for this gene is rimN

Identifier: 85060221

GI number: 85060221

Start: 3904288

End: 3904860

Strand: Reverse

Name: rimN

Synonym: SG2243

Alternate gene names: 85060221

Gene position: 3904860-3904288 (Counterclockwise)

Preceding gene: 85060222

Following gene: 85060220

Centisome position: 93.62

GC content: 58.99

Gene sequence:

>573_bases
ATGATGATTGAATCCTCCTCCCAGGACGTGGCGAGTCTGGTCATTGCGCTACGTCAACAGCAGGTTATCGCTTATCCGAC
GGAGGCCGTGTTCGGGTTGGGCTGCAATCCTGACAGCGAAAGCGCGGTCCAGGCGCTGTTGGCGTTAAAACAACGCCCGT
GGCAAAAAGGGCTAATTCTAGTCGCCGCGCATTACGCTCAGTTAAAGGAATATATTGACGACGACGCGTTAGATGATGCT
GCACGATCGCGGATCTTCGCCAGCTGGCCTGGTCCCGTGACGTGGGTGATACCGGTCTGTCCGACAACACCGAGCTGGCT
TACGGGGCAACATGCATCCCTTGCGGTACGCGTCAGCGCGTTTGAACCCGTACGGCGTCTTTGTCTTGCGTTCGGCAAGC
CGCTGGTGTCCACCAGTGCTAATCTGACCGGCCAACCGCCGGCGCGTAGCGCCGACGAAGTGCGCGGGCAATTGGGCGCC
GCTTTCCTGGTGCTGGACGAAGCGGTGGAAGGACGACTCAATCCCACTGAGATACGCGATGCTCTGAGCGGCGAATTGAT
TCGACAGGGCTGA

Upstream 100 bases:

>100_bases
TATTGCCATTTTCCGCTGTTGATGGCGAAAAATACTGCCCGCAACGTAAAGCGCTTTTGCGCTGATAAGCGTTGCGGCCG
ACTGGTAGCGATAAACGACA

Downstream 100 bases:

>100_bases
TTATAACCGGAGTGTCACCATGGATACCTTTGCCGTTTTTGGTAATCCGATTAACCATAGTCGTTCACCGCGCATCCATG
CGCTATTTGTCGCCGAGACA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLILVAAHYAQLKEYIDDDALDDA
ARSRIFASWPGPVTWVIPVCPTTPSWLTGQHASLAVRVSAFEPVRRLCLAFGKPLVSTSANLTGQPPARSADEVRGQLGA
AFLVLDEAVEGRLNPTEIRDALSGELIRQG

Sequences:

>Translated_190_residues
MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLILVAAHYAQLKEYIDDDALDDA
ARSRIFASWPGPVTWVIPVCPTTPSWLTGQHASLAVRVSAFEPVRRLCLAFGKPLVSTSANLTGQPPARSADEVRGQLGA
AFLVLDEAVEGRLNPTEIRDALSGELIRQG
>Mature_190_residues
MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLILVAAHYAQLKEYIDDDALDDA
ARSRIFASWPGPVTWVIPVCPTTPSWLTGQHASLAVRVSAFEPVRRLCLAFGKPLVSTSANLTGQPPARSADEVRGQLGA
AFLVLDEAVEGRLNPTEIRDALSGELIRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=181, Percent_Identity=63.5359116022099, Blast_Score=232, Evalue=1e-62,
Organism=Drosophila melanogaster, GI78707274, Length=181, Percent_Identity=33.1491712707182, Blast_Score=73, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_SODGM (Q2NQQ7)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455923.1
- ProteinModelPortal:   Q2NQQ7
- SMR:   Q2NQQ7
- STRING:   Q2NQQ7
- GeneID:   3866720
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG2243
- NMPDR:   fig|343509.6.peg.4923
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- PhylomeDB:   Q2NQQ7
- BioCyc:   SGLO343509:SG2243-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20477; Mature: 20477

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLIL
CCCCCCCHHHHHHHHHHHHHHHEECCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHH
VAAHYAQLKEYIDDDALDDAARSRIFASWPGPVTWVIPVCPTTPSWLTGQHASLAVRVSA
HHHHHHHHHHHHCCCHHHHHHHHCEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHH
FEPVRRLCLAFGKPLVSTSANLTGQPPARSADEVRGQLGAAFLVLDEAVEGRLNPTEIRD
HHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHHCCCCCHHHHHH
ALSGELIRQG
HHHHHHHCCC
>Mature Secondary Structure
MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLIL
CCCCCCCHHHHHHHHHHHHHHHEECCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHH
VAAHYAQLKEYIDDDALDDAARSRIFASWPGPVTWVIPVCPTTPSWLTGQHASLAVRVSA
HHHHHHHHHHHHCCCHHHHHHHHCEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHH
FEPVRRLCLAFGKPLVSTSANLTGQPPARSADEVRGQLGAAFLVLDEAVEGRLNPTEIRD
HHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHHCCCCCHHHHHH
ALSGELIRQG
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA