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The map label for this gene is yrdD [H]

Identifier: 85060222

GI number: 85060222

Start: 3904850

End: 3905404

Strand: Reverse

Name: yrdD [H]

Synonym: SG2244

Alternate gene names: 85060222

Gene position: 3905404-3904850 (Counterclockwise)

Preceding gene: 85060223

Following gene: 85060221

Centisome position: 93.63

GC content: 54.23

Gene sequence:

>555_bases
ATGACCAAAGCTGCGCTTTTTGCCGCGAAGCAAACGAAGGCCTGCCCCGAATGCGGGGCAGAGCTTGTTATTCGCTCTGG
CCAGCACGGCCCCTTTCTGGGCTGCTCTCATTACCCACAATGCGACTATATTCGTCCACTGAGGCCGCAGGGCGACGGAC
ATGTGGTAAAAGTGCTTGAAGGGCAGCTTTGCCTCGCATGTCACTCCACGCTGGTATTGCGCCAAGGACGCTTTGGTATG
TTTATCGGCTGCTCGAACTATCCCGAGTGCGAGCACATTGCACCCACGGCGGTGGCCGACACCACCGCTTTTACCTGTCC
AGAGTGCCGTTCCGGTAAATTGGTGCAGCGTACCTCGCGCTTTGGCAAAAGTTTTTACGCCTGTGATCGGTACCCAGCCT
GTAAATATGCCTTGAATAATCAACCTGTGGCGGGTGAATGCGAGTATTGCCATTTTCCGCTGTTGATGGCGAAAAATACT
GCCCGCAACGTAAAGCGCTTTTGCGCTGATAAGCGTTGCGGCCGACTGGTAGCGATAAACGACAATGATGATTGA

Upstream 100 bases:

>100_bases
ATATTCCCGGCTGCGAAAATGCCTATCAGCAAATGGAAGATTTGGTTTTTGAAGAAGACGAACAGCATCTGCATTGATGC
ATCAAAGATGATTTAACGCT

Downstream 100 bases:

>100_bases
ATCCTCCTCCCAGGACGTGGCGAGTCTGGTCATTGCGCTACGTCAACAGCAGGTTATCGCTTATCCGACGGAGGCCGTGT
TCGGGTTGGGCTGCAATCCT

Product: putative DNA topoisomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTKAALFAAKQTKACPECGAELVIRSGQHGPFLGCSHYPQCDYIRPLRPQGDGHVVKVLEGQLCLACHSTLVLRQGRFGM
FIGCSNYPECEHIAPTAVADTTAFTCPECRSGKLVQRTSRFGKSFYACDRYPACKYALNNQPVAGECEYCHFPLLMAKNT
ARNVKRFCADKRCGRLVAINDNDD

Sequences:

>Translated_184_residues
MTKAALFAAKQTKACPECGAELVIRSGQHGPFLGCSHYPQCDYIRPLRPQGDGHVVKVLEGQLCLACHSTLVLRQGRFGM
FIGCSNYPECEHIAPTAVADTTAFTCPECRSGKLVQRTSRFGKSFYACDRYPACKYALNNQPVAGECEYCHFPLLMAKNT
ARNVKRFCADKRCGRLVAINDNDD
>Mature_183_residues
TKAALFAAKQTKACPECGAELVIRSGQHGPFLGCSHYPQCDYIRPLRPQGDGHVVKVLEGQLCLACHSTLVLRQGRFGMF
IGCSNYPECEHIAPTAVADTTAFTCPECRSGKLVQRTSRFGKSFYACDRYPACKYALNNQPVAGECEYCHFPLLMAKNTA
RNVKRFCADKRCGRLVAINDNDD

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=178, Percent_Identity=64.6067415730337, Blast_Score=257, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20320; Mature: 20188

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAALFAAKQTKACPECGAELVIRSGQHGPFLGCSHYPQCDYIRPLRPQGDGHVVKVLE
CCCHHHEECHHCCCCHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
GQLCLACHSTLVLRQGRFGMFIGCSNYPECEHIAPTAVADTTAFTCPECRSGKLVQRTSR
CCEEEHHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHH
FGKSFYACDRYPACKYALNNQPVAGECEYCHFPLLMAKNTARNVKRFCADKRCGRLVAIN
HCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCEEEEEC
DNDD
CCCC
>Mature Secondary Structure 
TKAALFAAKQTKACPECGAELVIRSGQHGPFLGCSHYPQCDYIRPLRPQGDGHVVKVLE
CCHHHEECHHCCCCHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
GQLCLACHSTLVLRQGRFGMFIGCSNYPECEHIAPTAVADTTAFTCPECRSGKLVQRTSR
CCEEEHHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHH
FGKSFYACDRYPACKYALNNQPVAGECEYCHFPLLMAKNTARNVKRFCADKRCGRLVAIN
HCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCEEEEEC
DNDD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]