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The map label for this gene is secB

Identifier: 85060163

GI number: 85060163

Start: 3801860

End: 3802330

Strand: Reverse

Name: secB

Synonym: SG2185

Alternate gene names: 85060163

Gene position: 3802330-3801860 (Counterclockwise)

Preceding gene: 85060164

Following gene: 85060162

Centisome position: 91.16

GC content: 55.2

Gene sequence:

>471_bases
ATGTCAGAACAAAATAATAATGAGATGGCGTTTCAGATTCAGCGCATTTACACCAAGGATGTTTCGTTTGAAGCGCCGAA
TGCGCCCAAGTTTTTCCAGCAGGAATGGCAGCCTGAAATCAAACTGGATCTGGATACTGCCTCCAGCCAGTTGGCAGAGG
ACACCTATGAGGTCGTACTGCGGGTCACCGTGACGGCGACGTTGGGCGAAGATACCGCGTTTTTGTGCGAGGTCCAGCAG
GCAGGCATTTTCACCATCTCCGGCATTGACGGCACCCAAATGGCGCACTGCTTCGGCGCGTACTGCCCGAATATTCTATT
CCCCTACGCCCGCGAATGCATCACCAGCCAGGTATCCCGCGGCACTTTCCCACAATTGAATCTGGCGCCGGTCAATTTTG
ACGCGCTGTTCATGAATTACCTGCAGCAGCAGGCCGACGGCGCAGGCAGCCAGCCGGCTCAGGAAGCCTGA

Upstream 100 bases:

>100_bases
CGATGCGCGCGGCGGCCTGGACCCCCTGCTCAAATAATCAGAACCGACGGGTTGTGCGCCTTAGCCTTCGTACCCGGCAC
TTTAACCAAAGGGTTTTTCA

Downstream 100 bases:

>100_bases
TCATGCCCGGCGATGCTTCAATGATTGTTATCGGTGCCGGCTCGTACGGTACGGCCCTGGCTATCACCCTAGCGCGTAAC
GGTCATGAGGTGTTGCTGTG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSEQNNNEMAFQIQRIYTKDVSFEAPNAPKFFQQEWQPEIKLDLDTASSQLAEDTYEVVLRVTVTATLGEDTAFLCEVQQ
AGIFTISGIDGTQMAHCFGAYCPNILFPYARECITSQVSRGTFPQLNLAPVNFDALFMNYLQQQADGAGSQPAQEA

Sequences:

>Translated_156_residues
MSEQNNNEMAFQIQRIYTKDVSFEAPNAPKFFQQEWQPEIKLDLDTASSQLAEDTYEVVLRVTVTATLGEDTAFLCEVQQ
AGIFTISGIDGTQMAHCFGAYCPNILFPYARECITSQVSRGTFPQLNLAPVNFDALFMNYLQQQADGAGSQPAQEA
>Mature_155_residues
SEQNNNEMAFQIQRIYTKDVSFEAPNAPKFFQQEWQPEIKLDLDTASSQLAEDTYEVVLRVTVTATLGEDTAFLCEVQQA
GIFTISGIDGTQMAHCFGAYCPNILFPYARECITSQVSRGTFPQLNLAPVNFDALFMNYLQQQADGAGSQPAQEA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=156, Percent_Identity=83.974358974359, Blast_Score=279, Evalue=5e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_SODGM (Q2NQW5)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455865.1
- ProteinModelPortal:   Q2NQW5
- SMR:   Q2NQW5
- STRING:   Q2NQW5
- GeneID:   3866993
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG2185
- NMPDR:   fig|343509.6.peg.4812
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q2NQW5
- ProtClustDB:   PRK05751
- BioCyc:   SGLO343509:SG2185-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17349; Mature: 17217

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNNNEMAFQIQRIYTKDVSFEAPNAPKFFQQEWQPEIKLDLDTASSQLAEDTYEVVL
CCCCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHEEE
RVTVTATLGEDTAFLCEVQQAGIFTISGIDGTQMAHCFGAYCPNILFPYARECITSQVSR
EEEEEEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTFPQLNLAPVNFDALFMNYLQQQADGAGSQPAQEA
CCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SEQNNNEMAFQIQRIYTKDVSFEAPNAPKFFQQEWQPEIKLDLDTASSQLAEDTYEVVL
CCCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHEEE
RVTVTATLGEDTAFLCEVQQAGIFTISGIDGTQMAHCFGAYCPNILFPYARECITSQVSR
EEEEEEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTFPQLNLAPVNFDALFMNYLQQQADGAGSQPAQEA
CCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA