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The map label for this gene is rcsA [H]

Identifier: 85059217

GI number: 85059217

Start: 2088164

End: 2088796

Strand: Reverse

Name: rcsA [H]

Synonym: SG1239

Alternate gene names: 85059217

Gene position: 2088796-2088164 (Counterclockwise)

Preceding gene: 85059221

Following gene: 85059215

Centisome position: 50.08

GC content: 43.76

Gene sequence:

>633_bases
ATGGCAACGATTATTATGGACTCATGCAGTTATACCCGCCTAGGGCTGACTGGCTTTTTGACCGACACAGGGGTAAAGAG
CCGTAATATCAATACGGTAAATGACATTGCACAACTCCAGGCGCGATGCGATAAGCTAAAGCCGGCTGTGGTGTTTATCA
ATGAAGAATGCTTTATAAATGAACCTGATGCCACCGGTAGAATAAAACGCGTTATTACGGCTCATCCCGAAACGCTTTTT
TTCATTTTTATGGCAATGACCAATATCCATTTTGAAGACTACTTGTTCGTGCGCAAAAATCTCATTATTACTTCAAAATC
AATTAAGCCTGCCATACTTAATTCTCTGATTGCGGGATGCTGCAAAAACCGCATGACCGAGCACGCGCATTTAACGGGTC
TTGACCTTAACCCGGTCCGTCTGAGCCAAACTGAATCTCATATGTTACGCATGTGGATGTCGGGTCAAGATACGATCCAG
ATTTCTGATAGTATGCAGATTAAAGCCAAGACGGTTTCGTCGCATAAAGGCAACATCAAACGTAAGATCAAAACCCATAA
TAAGCAGGTGATTTATCATGTGGTCCGCCTGACCGAAACCGTTACCTCGGGCATTTTTGTCAATGCGCGTTGA

Upstream 100 bases:

>100_bases
TGGACACAAAAAAATAATTCAGAAGTACAGAAGTGATGTGAGGCTTTTGGGCATTTTATCGTTGAGTAAAACGGATAAAC
GAATCAGGTGAGGGTACGCT

Downstream 100 bases:

>100_bases
AATGGCTGCTTAAGTTACTTATCGCCGGCACGGCACCACGTTGATAATGGTGGTGTTCCTGCCGACTGCGCTGTTTTACT
ATCGGATACAATGGGTTATT

Product: colanic acid capsular biosynthesis activation protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MATIIMDSCSYTRLGLTGFLTDTGVKSRNINTVNDIAQLQARCDKLKPAVVFINEECFINEPDATGRIKRVITAHPETLF
FIFMAMTNIHFEDYLFVRKNLIITSKSIKPAILNSLIAGCCKNRMTEHAHLTGLDLNPVRLSQTESHMLRMWMSGQDTIQ
ISDSMQIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTETVTSGIFVNAR

Sequences:

>Translated_210_residues
MATIIMDSCSYTRLGLTGFLTDTGVKSRNINTVNDIAQLQARCDKLKPAVVFINEECFINEPDATGRIKRVITAHPETLF
FIFMAMTNIHFEDYLFVRKNLIITSKSIKPAILNSLIAGCCKNRMTEHAHLTGLDLNPVRLSQTESHMLRMWMSGQDTIQ
ISDSMQIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTETVTSGIFVNAR
>Mature_209_residues
ATIIMDSCSYTRLGLTGFLTDTGVKSRNINTVNDIAQLQARCDKLKPAVVFINEECFINEPDATGRIKRVITAHPETLFF
IFMAMTNIHFEDYLFVRKNLIITSKSIKPAILNSLIAGCCKNRMTEHAHLTGLDLNPVRLSQTESHMLRMWMSGQDTIQI
SDSMQIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTETVTSGIFVNAR

Specific function: Positive regulator of capsular polysaccharide synthesis. RcsA and rcsB form a complex to promote transcription of the genes for capsule synthesis [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788262, Length=210, Percent_Identity=61.4285714285714, Blast_Score=265, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23740; Mature: 23609

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIIMDSCSYTRLGLTGFLTDTGVKSRNINTVNDIAQLQARCDKLKPAVVFINEECFIN
CCEEEECCCCCEEECEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEE
EPDATGRIKRVITAHPETLFFIFMAMTNIHFEDYLFVRKNLIITSKSIKPAILNSLIAGC
CCCCCCHHHHEEECCCHHHHHHHHHHHCCCHHHEEEEEEEEEEEECCCCHHHHHHHHHHH
CKNRMTEHAHLTGLDLNPVRLSQTESHMLRMWMSGQDTIQISDSMQIKAKTVSSHKGNIK
HHHHCCCCCEEECCCCCCEECCCHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCHH
RKIKTHNKQVIYHVVRLTETVTSGIFVNAR
HHHHHCCHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure 
ATIIMDSCSYTRLGLTGFLTDTGVKSRNINTVNDIAQLQARCDKLKPAVVFINEECFIN
CEEEECCCCCEEECEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEE
EPDATGRIKRVITAHPETLFFIFMAMTNIHFEDYLFVRKNLIITSKSIKPAILNSLIAGC
CCCCCCHHHHEEECCCHHHHHHHHHHHCCCHHHEEEEEEEEEEEECCCCHHHHHHHHHHH
CKNRMTEHAHLTGLDLNPVRLSQTESHMLRMWMSGQDTIQISDSMQIKAKTVSSHKGNIK
HHHHCCCCCEEECCCCCCEECCCHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCHH
RKIKTHNKQVIYHVVRLTETVTSGIFVNAR
HHHHHCCHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1896018 [H]