| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is ybhH [H]
Identifier: 84625957
GI number: 84625957
Start: 4857634
End: 4858689
Strand: Reverse
Name: ybhH [H]
Synonym: XOO_4300
Alternate gene names: 84625957
Gene position: 4858689-4857634 (Counterclockwise)
Preceding gene: 84625958
Following gene: 84625956
Centisome position: 98.35
GC content: 67.14
Gene sequence:
>1056_bases ATGTCTGAGCGCGTGCGCGCGATGTGGATGCGCGGCGGCACCTCCAAGGGCGGCTTTTTTCTGGCCGACGAGTTGCCTGC CGACCCCGCCGCGCGCGATGCGTTTTTGCTGCGCGCCTACGGCTCGCCGGATGTGTGCCAGATCGACGGCATGGGTGGCG CCGATCCGCTGACATCGAAAACCGCCGTGGTGTCGCGCTCCACACGTGCCGATGCCGACGTGGACTATCTGTTCCTGCAG GTCGCAGTGAAACAGGCGCAGGTCAGCGATGCGCAGAACTGCGGCAACATGCTGGCCGGCGTGGCCCCGTTCGCGCTGGA GCGCGGCTTGCTGCCCACACGCATTGGCCAGACCGAAGTGCGCATTTTCATGCGCAACACCGGCACCCTGGCTACCGCCA CCGTGCAAACACCCGATGGCCAGGTGCGTTATGAGGGCGATGCCCGGATCGATGGCGTGCACGGTACGGCGGCGCCGACC GCGCTGGCATTTGCCGATATCGCCGGCTCCTCGTGCGGTGCACTGCTGCCCAGCGGGCAGGCGGTAGACACGCTCGACGG CCTGCAAGTCACGCTGATCGACAACGGCATGCCATGCGTGGTGCTGCGCGCCAGCGATGTCGGCATCAGCGGTTACGAAG ACCGCGCCACGCTCGATGCCGACGCCGCGCTCACGGCGCGCCTGGAAACGCTGCGTCTGCTCGCCGGCCCGTTGATGCAA CTGGGCGATGTGCGCGAGGCCACGGTGCCGAAGATGATGCTGGTCGCTGCGCCGCGCGCCGGTGGTGCGATCAGCGTGCG CTCGTTCATTCCGCACCGCTGCCATGCGTCGATCGGCGTACTGGGTGCGGTCACCGTCGCCACCGCCTGCCTGTTATCCG GCTCGCCCGCCCATGCGCTGGCGCGGTTACCCGGTGGGCGCACCCTGCAGGTGGAAGTCGAACACCCCAGCGGTGCGAGT AGCTGCGTGATCGATATTGATGCACGGGGTGCCGTGACGCGTGCGGCAGTGGTGAGCACGGCACGCAAATTGTTCGATGG TGAACTGTATGGCTGA
Upstream 100 bases:
>100_bases GAGGCACGCAAGCTGCGCAAGCGCGAGCGCCTGGCAAACGGCGAACTGGGCCTGGATATCTATGCAATGCGCGAACGCCT GGCCGCCAAGGGCCTGCGTT
Downstream 100 bases:
>100_bases GTATTCCGATGCATCGCTGACCTGCAGCGACCGCTATCAACGGGTCGGCTCGCTGTATGTGCCATCCGATGCGGCCGTCG AAACGCGGTGGGCGGCGGTC
Product: FldA protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MSERVRAMWMRGGTSKGGFFLADELPADPAARDAFLLRAYGSPDVCQIDGMGGADPLTSKTAVVSRSTRADADVDYLFLQ VAVKQAQVSDAQNCGNMLAGVAPFALERGLLPTRIGQTEVRIFMRNTGTLATATVQTPDGQVRYEGDARIDGVHGTAAPT ALAFADIAGSSCGALLPSGQAVDTLDGLQVTLIDNGMPCVVLRASDVGISGYEDRATLDADAALTARLETLRLLAGPLMQ LGDVREATVPKMMLVAAPRAGGAISVRSFIPHRCHASIGVLGAVTVATACLLSGSPAHALARLPGGRTLQVEVEHPSGAS SCVIDIDARGAVTRAAVVSTARKLFDGELYG
Sequences:
>Translated_351_residues MSERVRAMWMRGGTSKGGFFLADELPADPAARDAFLLRAYGSPDVCQIDGMGGADPLTSKTAVVSRSTRADADVDYLFLQ VAVKQAQVSDAQNCGNMLAGVAPFALERGLLPTRIGQTEVRIFMRNTGTLATATVQTPDGQVRYEGDARIDGVHGTAAPT ALAFADIAGSSCGALLPSGQAVDTLDGLQVTLIDNGMPCVVLRASDVGISGYEDRATLDADAALTARLETLRLLAGPLMQ LGDVREATVPKMMLVAAPRAGGAISVRSFIPHRCHASIGVLGAVTVATACLLSGSPAHALARLPGGRTLQVEVEHPSGAS SCVIDIDARGAVTRAAVVSTARKLFDGELYG >Mature_350_residues SERVRAMWMRGGTSKGGFFLADELPADPAARDAFLLRAYGSPDVCQIDGMGGADPLTSKTAVVSRSTRADADVDYLFLQV AVKQAQVSDAQNCGNMLAGVAPFALERGLLPTRIGQTEVRIFMRNTGTLATATVQTPDGQVRYEGDARIDGVHGTAAPTA LAFADIAGSSCGALLPSGQAVDTLDGLQVTLIDNGMPCVVLRASDVGISGYEDRATLDADAALTARLETLRLLAGPLMQL GDVREATVPKMMLVAAPRAGGAISVRSFIPHRCHASIGVLGAVTVATACLLSGSPAHALARLPGGRTLQVEVEHPSGASS CVIDIDARGAVTRAAVVSTARKLFDGELYG
Specific function: Unknown
COG id: COG2828
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yraM [H]
Homologues:
Organism=Escherichia coli, GI1786985, Length=349, Percent_Identity=46.7048710601719, Blast_Score=317, Evalue=1e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007400 [H]
Pfam domain/function: PF04303 PrpF [H]
EC number: NA
Molecular weight: Translated: 36347; Mature: 36216
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERVRAMWMRGGTSKGGFFLADELPADPAARDAFLLRAYGSPDVCQIDGMGGADPLTSK CCCHHEEHEECCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCC TAVVSRSTRADADVDYLFLQVAVKQAQVSDAQNCGNMLAGVAPFALERGLLPTRIGQTEV CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE RIFMRNTGTLATATVQTPDGQVRYEGDARIDGVHGTAAPTALAFADIAGSSCGALLPSGQ EEEEECCCCEEEEEEECCCCCEEECCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC AVDTLDGLQVTLIDNGMPCVVLRASDVGISGYEDRATLDADAALTARLETLRLLAGPLMQ CEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LGDVREATVPKMMLVAAPRAGGAISVRSFIPHRCHASIGVLGAVTVATACLLSGSPAHAL HCCCCHHHCCEEEEEECCCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH ARLPGGRTLQVEVEHPSGASSCVIDIDARGAVTRAAVVSTARKLFDGELYG HHCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SERVRAMWMRGGTSKGGFFLADELPADPAARDAFLLRAYGSPDVCQIDGMGGADPLTSK CCHHEEHEECCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCC TAVVSRSTRADADVDYLFLQVAVKQAQVSDAQNCGNMLAGVAPFALERGLLPTRIGQTEV CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE RIFMRNTGTLATATVQTPDGQVRYEGDARIDGVHGTAAPTALAFADIAGSSCGALLPSGQ EEEEECCCCEEEEEEECCCCCEEECCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC AVDTLDGLQVTLIDNGMPCVVLRASDVGISGYEDRATLDADAALTARLETLRLLAGPLMQ CEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LGDVREATVPKMMLVAAPRAGGAISVRSFIPHRCHASIGVLGAVTVATACLLSGSPAHAL HCCCCHHHCCEEEEEECCCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH ARLPGGRTLQVEVEHPSGASSCVIDIDARGAVTRAAVVSTARKLFDGELYG HHCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]