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The map label for this gene is rhaS [H]

Identifier: 84624883

GI number: 84624883

Start: 3664116

End: 3664841

Strand: Reverse

Name: rhaS [H]

Synonym: XOO_3226

Alternate gene names: 84624883

Gene position: 3664841-3664116 (Counterclockwise)

Preceding gene: 84624884

Following gene: 84624879

Centisome position: 74.18

GC content: 60.33

Gene sequence:

>726_bases
ATGAAGAGCATCGATCCTGCCGATCTTGAAGCGTTGTTCAATGCCGTGCCGGACGTGTTGTTCTTCGTCAAGGATCGTGA
GGGCCGCTACACCCACGTCAACCAGACCATGCTGCGGCGGCTGGGGCTGAAATCGCGCAAGGACCTGATCGGCAAGCGTG
TGGCCGAGGTCTATCCCAGTGGCCTGGGCGCCAATTACGCCAATCAGGACGAGCAGGTGCTGGCCGGCGAGGTGATCGAC
AACCTGCTGGAGCTCCACCTGTTCGCCAACCGTGAGCCTGGCTGGTGCCTGACCTGCAAGCGGCCGTTGGTGGTGAACGG
CAAGGTGCAGGGCATCATCGGCATCTCGCGCGATCTGGGCCCGCAGGATGGCCACGAATCGCAATACGAAAAGCTGCGAC
TTGCGCTGGCGTATCTCAACGCCAATTACGCGCAGAACGTCCGCATGCAGGCTCTGGTGGAGATCACCGGATTTTCCATG
TCCAAGCTGCAACGCTCGTTTCGCAAGGTGTTCCAGCTCACGCCGCAACAAGTGCTGGCCAAGCTTCGCCTGCAGATGGC
GATGCATCTGCTGCACGGCAACAAGAGCCTGACCGAAATCGGCCATGCCTGCGGTTTCAGCGATCAAAGCGCCTTCGCGC
GGCAATTCAAGCAAGCGGTGGGCATGACGCCGCGCGACTATCGTGCGTTGGCGAATGCGCAGCAGTTTTCAACCGACGCA
GTGTAA

Upstream 100 bases:

>100_bases
GCGTATCATGGCGCGGCAGGGGCGGATTGTTTCGATCGCGCGCCTGGTTTGATGCGCCTTTCCCGGTCTCGAGCACCTTG
CCTTGCATGAACCCCTTCGC

Downstream 100 bases:

>100_bases
AGGGCGGAGCGATCTCAACGTGCATGCGCAAGACGTGAGTTGAGCCTGAAAATTTTCCTCAACGTCTGATCATGTGCGTT
GCGAACAAGGGCTTGCCATG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKSIDPADLEALFNAVPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLAGEVID
NLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSM
SKLQRSFRKVFQLTPQQVLAKLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPRDYRALANAQQFSTDA
V

Sequences:

>Translated_241_residues
MKSIDPADLEALFNAVPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLAGEVID
NLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSM
SKLQRSFRKVFQLTPQQVLAKLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPRDYRALANAQQFSTDA
V
>Mature_241_residues
MKSIDPADLEALFNAVPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPSGLGANYANQDEQVLAGEVID
NLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLGPQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSM
SKLQRSFRKVFQLTPQQVLAKLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPRDYRALANAQQFSTDA
V

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=108, Percent_Identity=37.037037037037, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 27036; Mature: 27036

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIDPADLEALFNAVPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPS
CCCCCHHHHHHHHHHHHHHHEEEECCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
GLGANYANQDEQVLAGEVIDNLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCEEEEEEECCCCC
PQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTPQQVLA
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
KLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPRDYRALANAQQFSTDA
HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
V
C
>Mature Secondary Structure
MKSIDPADLEALFNAVPDVLFFVKDREGRYTHVNQTMLRRLGLKSRKDLIGKRVAEVYPS
CCCCCHHHHHHHHHHHHHHHEEEECCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
GLGANYANQDEQVLAGEVIDNLLELHLFANREPGWCLTCKRPLVVNGKVQGIIGISRDLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCEEEEEEECCCCC
PQDGHESQYEKLRLALAYLNANYAQNVRMQALVEITGFSMSKLQRSFRKVFQLTPQQVLA
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
KLRLQMAMHLLHGNKSLTEIGHACGFSDQSAFARQFKQAVGMTPRDYRALANAQQFSTDA
HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA