Click here to switch to the map view.

The map label for this gene is 84624879

Identifier: 84624879

GI number: 84624879

Start: 3657805

End: 3659994

Strand: Reverse

Name: 84624879

Synonym: XOO_3222

Alternate gene names: NA

Gene position: 3659994-3657805 (Counterclockwise)

Preceding gene: 84624883

Following gene: 84624875

Centisome position: 74.09

GC content: 60.68

Gene sequence:

>2190_bases
TTGACGCGGTGTGCGCGCAAATTGAATGGCGATACCGGAGGATGCAACGTGCCTAAAATTGAATCGACCAAGCAGGCCCC
CCCTGATCCCGCGCAATTGGTTCAAACTGCACCGACACCATCGGGCTCGGCATCAGTGGCAAGCACGTCTGCCGACAGTG
CGGTGCCCTCAGCGCAACTCGGCGGGCTTTCCATCAGGCCGCGGCTGTTGGGCCGAGCCTCCACAGCCAATCCCTCAGCG
GCATCGTCCAGCAACGCAAAGAACGTCAGGGCGGCGCTCTTTGCCGCGCAGTCAGTTTCGCAAGGGCCAGATCCTGCCGA
AGTATTGGTCAAGGCCTCATCCAGGCTGAAACGCTTCAACGACTTGGCACAAAAAGTAGTGCCGACAGAACCGTCGGATA
TCAAAGCCCTGGAAGCAAGACTCCGGTCCGGAACGTCTGCGCTCGAATCCGCTCGACAGGCCTTTCAGGCGCTTGCCGAG
TTGAATATCAAAAAACGCATTCCGGTCGACAATATCGAAGAACACGAGAATTTCCTGGTGCCGCAGTTCGCAATCGCCGC
ATCCCTGCACTTCGGCGCATGCCAGAAGATGATCGATCAGAAAATGGCCACCGAATTGGGCCATGTGCCCACCCAAAGGG
TCGAGATGGTGACGTTGTCCGTTGACGCCACCCGTCTGCAGCAACCGGAATCATGGCTTGCGTTACGCGCTCATATTCTG
AATTCCCTTGCAGCGCTGGAGGAGGTTTGCCAGCGCATCAGGTCGCCGATGACGGGTCAGGGGCCGCGTGACTCGCTCAA
GGCCAATCTCCCCGTCGTCAGGGCGATGATCGCATCGTGCCATGAACGCATGCAGACCGTCCGCGGAATGCTCGTCGAAA
TATATTCAAGGAGACTTAGCGATCAGGCCACCGATTGCGGCCTGCTCCAGGTGCTTGACAGACTGAGGGAGCTCGAAGAA
ATCGACAGCCTTAACCATGCTGCGGTCGGCGAAGCGCTCAATCATGTGATCCAGGTCCATATCGAACGTCTGTCCTCAAC
CGAGCATTCGCTCACACCGGAGGCGCTGGCCCTGTGCAAAAGGCTACTCGTCGAATACGCCGAGGTGCGCGGCCGAGCGG
GGATGCAGCTGTGTGTAGATGCCGCCGCGCTCATCGAACAAGGTGAGCATGCCAGAGATCATCTATGGCCAACGATGCTC
CATCTTGCACAGGCACTTGCCGACCAACGTCAGGCAATTCTTGACATGTGTGAGTTCGCCGTCCAGGACAGACAGCTGAT
TGGCACGGCGGCGGCTTCGCCCGAGCAAGCACCGGCATCGATAACACCGAGCGTGCCGACAACGACAGCAGGCAAATCGA
GCAGGTCACGCAAGGCACGCATGCGCACCTCTGATGCTTCCAGCTCGGCAGCGCCCGCGCAGCGGGTCATTGACGAGCGC
AACGCAGCGCAAAAGCAGGCCGACGAGATACTGAAAAGCACGCGTCTGGAGTCGTTGCCGGTGGCAGAACTCGGCGGCGA
TTTCATCGCGCTCGCCAAGCGCCTTGGCAAGGACACCACCGACATAGAGCGCCTGATCGGCGACTCCAGGCGTGACGCGG
CGACGGCTTTCGATTTTGCCAGGACCTCCATGCAGGACTGGTTCGGATCGAGTGAGCGTCTGCTGCAGCTCAAAAGCAAG
CTCCGTGCGGGAGACCCGCGCATCGCACAACTCGACACGCGGCTGCGTCTTCTGCAGAGGATCGAGCAGGAGTTTGAACG
GCGCGAAGCCGATGCGCTCAAGACCGATCCGCAACCGCGTGCGCCGCATCTGCAGCGCCTGTTGGCGATGCATGCACTGG
CACGCGTCACGGCGCCGAACCGCCTTCCCTCGGAGGACGACCGTGGCGACCGTGGCAGGCTATTCGAAGTGCGTATCGAC
CACACGCCGCAGTCAAATGGCGACATTCCCGCGCCCTGGTTCGTCCATGTACATACCGAAAAACCGGTAACGTCCACCGG
GCTGCGCGCGCTCCACTACAAGGACTTGGCCGCCGTCCATCTGAAGACGGCCAGGGAGGTCAACCTGGGCGCACGCTGGG
AAGAGATGATGCGCGCCCTCGGAAACACCGAGGCCAAGGTGCACCGGGCAACCATCGGCTCGAAGCTGATGGGCCAGCTT
TGGGCGGCTGGCGCTGGTGGGCAACAGTAA

Upstream 100 bases:

>100_bases
TTACTGCGCCACGCAGTGGCAACTGCATCGCTGCCGGCTCGCAAGGCGTGGGGTACGGCACCACCACGTTCCACGCACAT
TCCCGGACGGGGGAAGCACC

Downstream 100 bases:

>100_bases
CCACGACGCGCCGTCTGTCCTCGCCAAGGAAAGAGATCTTCGGAAAAGAACGCCCCACGACCGGCCTACTCACTCAACGT
GCATGGCCAGCCTCGTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Type III Effector; Outer Protein P

Number of amino acids: Translated: 729; Mature: 728

Protein sequence:

>729_residues
MTRCARKLNGDTGGCNVPKIESTKQAPPDPAQLVQTAPTPSGSASVASTSADSAVPSAQLGGLSIRPRLLGRASTANPSA
ASSSNAKNVRAALFAAQSVSQGPDPAEVLVKASSRLKRFNDLAQKVVPTEPSDIKALEARLRSGTSALESARQAFQALAE
LNIKKRIPVDNIEEHENFLVPQFAIAASLHFGACQKMIDQKMATELGHVPTQRVEMVTLSVDATRLQQPESWLALRAHIL
NSLAALEEVCQRIRSPMTGQGPRDSLKANLPVVRAMIASCHERMQTVRGMLVEIYSRRLSDQATDCGLLQVLDRLRELEE
IDSLNHAAVGEALNHVIQVHIERLSSTEHSLTPEALALCKRLLVEYAEVRGRAGMQLCVDAAALIEQGEHARDHLWPTML
HLAQALADQRQAILDMCEFAVQDRQLIGTAAASPEQAPASITPSVPTTTAGKSSRSRKARMRTSDASSSAAPAQRVIDER
NAAQKQADEILKSTRLESLPVAELGGDFIALAKRLGKDTTDIERLIGDSRRDAATAFDFARTSMQDWFGSSERLLQLKSK
LRAGDPRIAQLDTRLRLLQRIEQEFERREADALKTDPQPRAPHLQRLLAMHALARVTAPNRLPSEDDRGDRGRLFEVRID
HTPQSNGDIPAPWFVHVHTEKPVTSTGLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLMGQL
WAAGAGGQQ

Sequences:

>Translated_729_residues
MTRCARKLNGDTGGCNVPKIESTKQAPPDPAQLVQTAPTPSGSASVASTSADSAVPSAQLGGLSIRPRLLGRASTANPSA
ASSSNAKNVRAALFAAQSVSQGPDPAEVLVKASSRLKRFNDLAQKVVPTEPSDIKALEARLRSGTSALESARQAFQALAE
LNIKKRIPVDNIEEHENFLVPQFAIAASLHFGACQKMIDQKMATELGHVPTQRVEMVTLSVDATRLQQPESWLALRAHIL
NSLAALEEVCQRIRSPMTGQGPRDSLKANLPVVRAMIASCHERMQTVRGMLVEIYSRRLSDQATDCGLLQVLDRLRELEE
IDSLNHAAVGEALNHVIQVHIERLSSTEHSLTPEALALCKRLLVEYAEVRGRAGMQLCVDAAALIEQGEHARDHLWPTML
HLAQALADQRQAILDMCEFAVQDRQLIGTAAASPEQAPASITPSVPTTTAGKSSRSRKARMRTSDASSSAAPAQRVIDER
NAAQKQADEILKSTRLESLPVAELGGDFIALAKRLGKDTTDIERLIGDSRRDAATAFDFARTSMQDWFGSSERLLQLKSK
LRAGDPRIAQLDTRLRLLQRIEQEFERREADALKTDPQPRAPHLQRLLAMHALARVTAPNRLPSEDDRGDRGRLFEVRID
HTPQSNGDIPAPWFVHVHTEKPVTSTGLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLMGQL
WAAGAGGQQ
>Mature_728_residues
TRCARKLNGDTGGCNVPKIESTKQAPPDPAQLVQTAPTPSGSASVASTSADSAVPSAQLGGLSIRPRLLGRASTANPSAA
SSSNAKNVRAALFAAQSVSQGPDPAEVLVKASSRLKRFNDLAQKVVPTEPSDIKALEARLRSGTSALESARQAFQALAEL
NIKKRIPVDNIEEHENFLVPQFAIAASLHFGACQKMIDQKMATELGHVPTQRVEMVTLSVDATRLQQPESWLALRAHILN
SLAALEEVCQRIRSPMTGQGPRDSLKANLPVVRAMIASCHERMQTVRGMLVEIYSRRLSDQATDCGLLQVLDRLRELEEI
DSLNHAAVGEALNHVIQVHIERLSSTEHSLTPEALALCKRLLVEYAEVRGRAGMQLCVDAAALIEQGEHARDHLWPTMLH
LAQALADQRQAILDMCEFAVQDRQLIGTAAASPEQAPASITPSVPTTTAGKSSRSRKARMRTSDASSSAAPAQRVIDERN
AAQKQADEILKSTRLESLPVAELGGDFIALAKRLGKDTTDIERLIGDSRRDAATAFDFARTSMQDWFGSSERLLQLKSKL
RAGDPRIAQLDTRLRLLQRIEQEFERREADALKTDPQPRAPHLQRLLAMHALARVTAPNRLPSEDDRGDRGRLFEVRIDH
TPQSNGDIPAPWFVHVHTEKPVTSTGLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLMGQLW
AAGAGGQQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79506; Mature: 79375

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRCARKLNGDTGGCNVPKIESTKQAPPDPAQLVQTAPTPSGSASVASTSADSAVPSAQL
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHC
GGLSIRPRLLGRASTANPSAASSSNAKNVRAALFAAQSVSQGPDPAEVLVKASSRLKRFN
CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DLAQKVVPTEPSDIKALEARLRSGTSALESARQAFQALAELNIKKRIPVDNIEEHENFLV
HHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHCCCC
PQFAIAASLHFGACQKMIDQKMATELGHVPTQRVEMVTLSVDATRLQQPESWLALRAHIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHCCHHHHHHHHHHH
NSLAALEEVCQRIRSPMTGQGPRDSLKANLPVVRAMIASCHERMQTVRGMLVEIYSRRLS
HHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQATDCGLLQVLDRLRELEEIDSLNHAAVGEALNHVIQVHIERLSSTEHSLTPEALALCK
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RLLVEYAEVRGRAGMQLCVDAAALIEQGEHARDHLWPTMLHLAQALADQRQAILDMCEFA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQDRQLIGTAAASPEQAPASITPSVPTTTAGKSSRSRKARMRTSDASSSAAPAQRVIDER
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
NAAQKQADEILKSTRLESLPVAELGGDFIALAKRLGKDTTDIERLIGDSRRDAATAFDFA
HHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
RTSMQDWFGSSERLLQLKSKLRAGDPRIAQLDTRLRLLQRIEQEFERREADALKTDPQPR
HHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
APHLQRLLAMHALARVTAPNRLPSEDDRGDRGRLFEVRIDHTPQSNGDIPAPWFVHVHTE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC
KPVTSTGLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLMGQL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
WAAGAGGQQ
HHCCCCCCC
>Mature Secondary Structure 
TRCARKLNGDTGGCNVPKIESTKQAPPDPAQLVQTAPTPSGSASVASTSADSAVPSAQL
CHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHC
GGLSIRPRLLGRASTANPSAASSSNAKNVRAALFAAQSVSQGPDPAEVLVKASSRLKRFN
CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DLAQKVVPTEPSDIKALEARLRSGTSALESARQAFQALAELNIKKRIPVDNIEEHENFLV
HHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHCCCC
PQFAIAASLHFGACQKMIDQKMATELGHVPTQRVEMVTLSVDATRLQQPESWLALRAHIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHCCHHHHHHHHHHH
NSLAALEEVCQRIRSPMTGQGPRDSLKANLPVVRAMIASCHERMQTVRGMLVEIYSRRLS
HHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQATDCGLLQVLDRLRELEEIDSLNHAAVGEALNHVIQVHIERLSSTEHSLTPEALALCK
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RLLVEYAEVRGRAGMQLCVDAAALIEQGEHARDHLWPTMLHLAQALADQRQAILDMCEFA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQDRQLIGTAAASPEQAPASITPSVPTTTAGKSSRSRKARMRTSDASSSAAPAQRVIDER
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
NAAQKQADEILKSTRLESLPVAELGGDFIALAKRLGKDTTDIERLIGDSRRDAATAFDFA
HHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
RTSMQDWFGSSERLLQLKSKLRAGDPRIAQLDTRLRLLQRIEQEFERREADALKTDPQPR
HHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
APHLQRLLAMHALARVTAPNRLPSEDDRGDRGRLFEVRIDHTPQSNGDIPAPWFVHVHTE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC
KPVTSTGLRALHYKDLAAVHLKTAREVNLGARWEEMMRALGNTEAKVHRATIGSKLMGQL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
WAAGAGGQQ
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA