| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is rng [H]
Identifier: 84624787
GI number: 84624787
Start: 3549061
End: 3550560
Strand: Reverse
Name: rng [H]
Synonym: XOO_3130
Alternate gene names: 84624787
Gene position: 3550560-3549061 (Counterclockwise)
Preceding gene: 84624788
Following gene: 84624786
Centisome position: 71.87
GC content: 64.47
Gene sequence:
>1500_bases ATGTCGGAAGAGATCTTGGTCAACGTCACTCCACGCGAGACCCGTGTGGCGGTGATCGAGAACGGCATGCTGCAGGAGCT GCATATCGAGCGCGGTTGGCGCCGAGGCGTGGTGGGCAATATCTACAAAGGCAAAGTGCAGCGGGTGATGCCCGGCATGC AGGCTGCCTTTGTCGAAGTAGGGCTGGAGCGTGCCGCCTTCCTGCACGCCAACGATGTGATCCGTCTGGCGCCGGCGCCG GCCAGCGTGGTCGATACCGAAGAAACGCCGATCCCGCCGCCACCGCCGGCCTCGGTGCCGATCGTGGAGCTGCTGCGCGA TGGCCAGGACATCGTGGTGCAGGTGGTCAAGGACCCGATCGGCACCAAGGGGGCGCGGTTGACCACCCAGATCAGCATTC CGTCGCGCTATCTGGTGCTGCTGCCGCAGTCCAAGGTCGTTGGGGTGTCGGCGCGCATCGAAGACGAAGCCGAGCGGCTG CGCCTGAAGACCATCGTCAGCGAGGTCTCGGCCCAGCATGGCGGCTTCGGCTACATCATCCGCACCAATGCCGAAGGCCA GCCGGCCGAGGCGCTGGCCGAGGACATCGCGTATCTCTCGCGGGTCTGGAACGTGGTCGAGCGCCGCGGCCGCGAGGCGC CGCCGTGCAGCATCATCTACGAAGACCTGAGCCTGCCGCTGCGTGCGGTGCGCGACCTGATCCGCCGCGACGTGGAAAAG GTCAAAGTCGATTCCAACGAGACCTTCGTGCAATTGCAGGCCTTCGTGGCCAAGTACATGCCGGTGCTGGCCGAGCGGCT GGAGCTGTACACCGGCGACCGGCCGATCTTCGACCTGTACGGCGTGGAAGACGAGATCGGCCGTGCGTTGAACAAGCAGG TGCCGCTCAAGTCCGGGGGCTACCTGGTGATCGACCAGACCGAAGCGATGACCACCATCGACGTCAACACCGGCTCGTTC GTCGGTCAGCGCAACCTCGAAGAAACCGTGTTCCGCACCAATCTGGAAGCCGCACAGGCGGTGGCGCGGCAACTGCGCCT GCGCAACCTGGGCGGCATCATCATCATCGACTTCATCGACATGGACGACTCCGAGCATCGTCGTCAGGTGCTGCGCACGC TGGAGAAGGCGCTGGCACGCGATCACGCCAAGACCACCGTGTACGAGTTCTCGCCGTTGGGCTTGGTGGAGATGACCCGC AAGCGCACCGTCGAAAGCCTCGAGCGCCAGCTCTCGGAAACCTGCGGCCAATGCGGTGGGCGCGGCACCATCAAGACCGC CGAAACGGTGACCTACGAGATCTTTCGCGAGATCACCCGCGCGGTGCGCCAGTTCGATGCCGCGCGCCTGCTGGTGATCG CGTCGTCGAAAGTGGTCGCGCGCATCACCGACGAAGAATCGGCAGCCGTGGCCGAGCTGGAAGAGTTTCTCGGCAAGAGC ATCCTCTTCCAGTCCGACGACCAGTATCTGCAGGAGCAGTTCGATGTGGTGCTGCTGTGA
Upstream 100 bases:
>100_bases CCGAGCGCTTCATTCGCCATCTGTCCGGAAGCTATTCCGGCGTGATGGGATTGCCGCTTTATCACACCTCGCAGTTGCTC ACAGCCTTCGGAGCGCATTG
Downstream 100 bases:
>100_bases GGTCGGGATTGGAGAATCGGGATTCGGGATTTGTAAAAGCCGGCCCCGTCATGATGTGCGGCCAGCAGGCGCGTTGACGT TACCGTGCCCGGACACGCTG
Product: ribonuclease G
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVIRLAPAP ASVVDTEETPIPPPPPASVPIVELLRDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERL RLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSF VGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDEESAAVAELEEFLGKS ILFQSDDQYLQEQFDVVLL
Sequences:
>Translated_499_residues MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVIRLAPAP ASVVDTEETPIPPPPPASVPIVELLRDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERL RLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSF VGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDEESAAVAELEEFLGKS ILFQSDDQYLQEQFDVVLL >Mature_498_residues SEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVIRLAPAPA SVVDTEETPIPPPPPASVPIVELLRDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLR LKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEKV KVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFV GQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRK RTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDEESAAVAELEEFLGKSI LFQSDDQYLQEQFDVVLL
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=499, Percent_Identity=56.312625250501, Blast_Score=528, Evalue=1e-151, Organism=Escherichia coli, GI1787325, Length=475, Percent_Identity=35.7894736842105, Blast_Score=282, Evalue=3e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 55703; Mature: 55571
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEV CCCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH GLERAAFLHANDVIRLAPAPASVVDTEETPIPPPPPASVPIVELLRDGQDIVVQVVKDPI HHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC GTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLRLKTIVSEVSAQHGGFGYII CCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE RTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHCCHHHHHHHHHHHHHHH VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCCC YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFID EEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC MDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVESLERQLSETCGQCGG CCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC RGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDEESAAVAELEEFLGKS CCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCCEEEEECCCHHHHHHHHHHHHCCC ILFQSDDQYLQEQFDVVLL EEECCCHHHHHHHCCEECC >Mature Secondary Structure SEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEV CCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH GLERAAFLHANDVIRLAPAPASVVDTEETPIPPPPPASVPIVELLRDGQDIVVQVVKDPI HHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC GTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLRLKTIVSEVSAQHGGFGYII CCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE RTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHCCHHHHHHHHHHHHHHH VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCCC YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFID EEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC MDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVESLERQLSETCGQCGG CCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC RGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDEESAAVAELEEFLGKS CCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCCEEEEECCCHHHHHHHHHHHHCCC ILFQSDDQYLQEQFDVVLL EEECCCHHHHHHHCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]