| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is ytfP [H]
Identifier: 84624591
GI number: 84624591
Start: 3317391
End: 3318653
Strand: Direct
Name: ytfP [H]
Synonym: XOO_2934
Alternate gene names: 84624591
Gene position: 3317391-3318653 (Clockwise)
Preceding gene: 84624590
Following gene: 84624593
Centisome position: 67.15
GC content: 65.32
Gene sequence:
>1263_bases ATGACGGGTTCGAACAAGCGGCGGCTGGCCGTGATCGGTGGTGGGCCGGCCGGCTTGATGGCGGCAGAAGTGGCCTGTGC TGCGGGCCTGGCAGTGGATCTGTACGAGGCCAAGGGCTCGGTGGGGCGCAAGTTTCTGATTGCCGGCAAAGGCGGTTTGA ACCTCACCCATTCCGATCCGATGCCGCTGTTTGCGCAACGCTATCGCGAGCGTCAGCAGCCGGTCGCCGCATGGCTGCAG GACTTCGACGCAGGGGCGCTGTGCGACTGGGCAAGCGTGCTGGGTGTTGACACTTACGTCGGCAGCTCCGGCCGTGTGTT TCCGATGGACCGCAAGGCAGCGCCCTTGCTGCGCGGCTGGGTGCGTCGGCTCAAGGAACAGGGCGTCGTGTTTCATGTGC AACACCGTTGGCGTGGCTGGAGCGAGGACGGCGCACTACGTTTCGATGCACCCACCGGCGCGATCGAGCGCAACGCAGAT GCCGTCGTGTTGGCGCTGGGTGGCGGCAGCTGGCCGCAGCTCGGTTCCGATGGGCAGTGGCAAGCCGCATTGCAGCAACA CGGCATTGCGGTTGCGCCCTTGGTACCGGCTAACTGCGGCTTCGATATCGACTGGAGCGCGCATTTCGTGCAGCGTCATG CAGGTGCGCCGCTCAAGCCCGTCGTTGCACACTGGCAAGATCGCAATGGCGTACAGCACACATTGCAGGGTGAATGCGTG GCCACAGCGGACGGCATCGAGGGCAGCCTGATCTATGCCATGGCTGCGGATCTGCGCGAGCAGATCGAGGCGCATGGCGT TGCCGAACTCATGCTGGATCTGGTGCCAGGGCGCTCACGTGAGCGCGTGCACACCGAATTGGCCCAGCCACGCAAAGGAC GCAGTTTCAGCGAGCATATGCGTCGCCAGGTCGGCATCGATGGCGTCAAGGCCGCCCTGCTCTACGAACATCTCGGCACG CAGGCGGGCGACGATATTGCGTTGGCCGCACGCACGCTCAAGCAGTTGCCGCTGCGCTTGCTGCGGACGCGCCCGCTCGC CGAAGCGATCAGTTCGGCAGGCGGCGTGCGGCTTGAAGCGCTGGACGATCAGCTGATGGCAATCGCGCAACCTGGCGTGT TCTGCGCTGGCGAAATGCTCGATTGGGAAGCACCGACCGGCGGCTACCTGCTCACCGCCTGTTTCGCCAGCGGCCTGCGC GCCGCACGTGGGGCGGTGCAGTGGCTCGATCAGCACGACAGGCGCGCTACAGACGATCGCTGA
Upstream 100 bases:
>100_bases GTTACGGCGATAACGGCGCCGGTGGTGTGATTCCGCCCGGTGCCTCGTTGGTCTTCGATGTGGAATTGCTGGACGTGCAG CCGCGCTGAGTGCCAGAACG
Downstream 100 bases:
>100_bases CAGCCGCACGCGGCCACGCCGATTTGACGTCGTAGACCACCGCGCCCGGTTTGCCGAGCGCGGCAATGCGCGCGGCGTCG TAGGCGCGATACTGCGCATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTGSNKRRLAVIGGGPAGLMAAEVACAAGLAVDLYEAKGSVGRKFLIAGKGGLNLTHSDPMPLFAQRYRERQQPVAAWLQ DFDAGALCDWASVLGVDTYVGSSGRVFPMDRKAAPLLRGWVRRLKEQGVVFHVQHRWRGWSEDGALRFDAPTGAIERNAD AVVLALGGGSWPQLGSDGQWQAALQQHGIAVAPLVPANCGFDIDWSAHFVQRHAGAPLKPVVAHWQDRNGVQHTLQGECV ATADGIEGSLIYAMAADLREQIEAHGVAELMLDLVPGRSRERVHTELAQPRKGRSFSEHMRRQVGIDGVKAALLYEHLGT QAGDDIALAARTLKQLPLRLLRTRPLAEAISSAGGVRLEALDDQLMAIAQPGVFCAGEMLDWEAPTGGYLLTACFASGLR AARGAVQWLDQHDRRATDDR
Sequences:
>Translated_420_residues MTGSNKRRLAVIGGGPAGLMAAEVACAAGLAVDLYEAKGSVGRKFLIAGKGGLNLTHSDPMPLFAQRYRERQQPVAAWLQ DFDAGALCDWASVLGVDTYVGSSGRVFPMDRKAAPLLRGWVRRLKEQGVVFHVQHRWRGWSEDGALRFDAPTGAIERNAD AVVLALGGGSWPQLGSDGQWQAALQQHGIAVAPLVPANCGFDIDWSAHFVQRHAGAPLKPVVAHWQDRNGVQHTLQGECV ATADGIEGSLIYAMAADLREQIEAHGVAELMLDLVPGRSRERVHTELAQPRKGRSFSEHMRRQVGIDGVKAALLYEHLGT QAGDDIALAARTLKQLPLRLLRTRPLAEAISSAGGVRLEALDDQLMAIAQPGVFCAGEMLDWEAPTGGYLLTACFASGLR AARGAVQWLDQHDRRATDDR >Mature_419_residues TGSNKRRLAVIGGGPAGLMAAEVACAAGLAVDLYEAKGSVGRKFLIAGKGGLNLTHSDPMPLFAQRYRERQQPVAAWLQD FDAGALCDWASVLGVDTYVGSSGRVFPMDRKAAPLLRGWVRRLKEQGVVFHVQHRWRGWSEDGALRFDAPTGAIERNADA VVLALGGGSWPQLGSDGQWQAALQQHGIAVAPLVPANCGFDIDWSAHFVQRHAGAPLKPVVAHWQDRNGVQHTLQGECVA TADGIEGSLIYAMAADLREQIEAHGVAELMLDLVPGRSRERVHTELAQPRKGRSFSEHMRRQVGIDGVKAALLYEHLGTQ AGDDIALAARTLKQLPLRLLRTRPLAEAISSAGGVRLEALDDQLMAIAQPGVFCAGEMLDWEAPTGGYLLTACFASGLRA ARGAVQWLDQHDRRATDDR
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 45299; Mature: 45168
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGSNKRRLAVIGGGPAGLMAAEVACAAGLAVDLYEAKGSVGRKFLIAGKGGLNLTHSDP CCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEHHCCCCCCEEEEECCCCCCCCCCCC MPLFAQRYRERQQPVAAWLQDFDAGALCDWASVLGVDTYVGSSGRVFPMDRKAAPLLRGW CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCEEECCCCCCHHHHHH VRRLKEQGVVFHVQHRWRGWSEDGALRFDAPTGAIERNADAVVLALGGGSWPQLGSDGQW HHHHHHCCCEEEEEHHCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH QAALQQHGIAVAPLVPANCGFDIDWSAHFVQRHAGAPLKPVVAHWQDRNGVQHTLQGECV HHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCHHCCCCEE ATADGIEGSLIYAMAADLREQIEAHGVAELMLDLVPGRSRERVHTELAQPRKGRSFSEHM EECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHH RRQVGIDGVKAALLYEHLGTQAGDDIALAARTLKQLPLRLLRTRPLAEAISSAGGVRLEA HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEH LDDQLMAIAQPGVFCAGEMLDWEAPTGGYLLTACFASGLRAARGAVQWLDQHDRRATDDR HHHHHHHHHCCCCEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TGSNKRRLAVIGGGPAGLMAAEVACAAGLAVDLYEAKGSVGRKFLIAGKGGLNLTHSDP CCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEHHCCCCCCEEEEECCCCCCCCCCCC MPLFAQRYRERQQPVAAWLQDFDAGALCDWASVLGVDTYVGSSGRVFPMDRKAAPLLRGW CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCEEECCCCCCHHHHHH VRRLKEQGVVFHVQHRWRGWSEDGALRFDAPTGAIERNADAVVLALGGGSWPQLGSDGQW HHHHHHCCCEEEEEHHCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH QAALQQHGIAVAPLVPANCGFDIDWSAHFVQRHAGAPLKPVVAHWQDRNGVQHTLQGECV HHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCHHCCCCEE ATADGIEGSLIYAMAADLREQIEAHGVAELMLDLVPGRSRERVHTELAQPRKGRSFSEHM EECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHH RRQVGIDGVKAALLYEHLGTQAGDDIALAARTLKQLPLRLLRTRPLAEAISSAGGVRLEA HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEH LDDQLMAIAQPGVFCAGEMLDWEAPTGGYLLTACFASGLRAARGAVQWLDQHDRRATDDR HHHHHHHHHCCCCEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]