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The map label for this gene is sucD [H]

Identifier: 84623134

GI number: 84623134

Start: 1617892

End: 1618767

Strand: Direct

Name: sucD [H]

Synonym: XOO_1477

Alternate gene names: 84623134

Gene position: 1617892-1618767 (Clockwise)

Preceding gene: 84623133

Following gene: 84623135

Centisome position: 32.75

GC content: 64.27

Gene sequence:

>876_bases
ATGTCCGTTTTGATTAACAAGAACACCAAGGTGATCGTGCAGGGCTTTACCGGCCAGCAGGGCACCTTCCACGCTACCCA
GATGGTCGAGTACGGCACCCAGGTCGTCGGCGGCGTCACCCCGGGCAAGGGCGGCACCACCCACATCGACCTGCCGGTGT
TCAACACCGTCGCCGATGCAGTCAAGGCCACTGGTGCCGATGCTTCGGTCATCTACGTTCCGCCGCCGTTCGCGGCCGAT
GCGATCCTGGAAGCCGCTGCTGCCGGCATCAAGGTCATCGTCTGCATCACCGAAGGCATTCCGGTGCTGGACATGCTGCG
CGTCAAGAACGTGCTGACCCGTTCGCATGCGGACACCGTGCTGATCGGGCCGAACTGCCCCGGCGTGATCACCCCGGGCC
AGTGCAAGATCGGCATCATGCCGGGCCACATCCACAAGCCTGGCAAGATCGGCATCGTGTCGCGTTCGGGCACGCTGACC
TATGAAGCGGTCAAGCAGACCACCGAAGTAGGCCTGGGCCAGAGCACCTGCATCGGCATCGGCGGCGACCCGATCAACGG
CCTGAACTTCGTCGACTGCCTCAAGCTGTTCAACGAAGACCCGCAGACCGAAGGCATCATCATGGTCGGCGAAATCGGCG
GCGACGCCGAGGAAGCCGGTGCCGAGTACATCAAGAACCACGTCAAGAAGCCGGTGGTCGGCTTCATCGCCGGGGCTTCT
GCTCCGGCCGGCAAGCGCATGGGCCACGCCGGTGCGATCGCATCGGGCGGCAAGGGCACGGCCGAAGGCAAGTTCGCGGC
GATGGAAGCCGCTGGCGTCAAGACCGTCCGTTCGCCGGGCGATCTGGGTGCGGCGATTGCTGCGCTGGTGAAGTAA

Upstream 100 bases:

>100_bases
CATGGCCATCATCCCGGCCGACAACATCAACGACGGCGCCAAGAAAGTCGTTGAAGCTGTCAAGAACGCCGCCTGATCCA
CGACACCGAAGGAATTATCC

Downstream 100 bases:

>100_bases
GCCTTACCAGTATGGTGCCGCAGAAAGCCGCCTTCGGGCGGCTTTCTGCATTTTTGCTCATGTCTTGCAGTCGTCGCCTC
TGAAAAGCCCCCTTTACCAC

Product: succinyl-CoA synthetase subunit alpha

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha [H]

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSVLINKNTKVIVQGFTGQQGTFHATQMVEYGTQVVGGVTPGKGGTTHIDLPVFNTVADAVKATGADASVIYVPPPFAAD
AILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHADTVLIGPNCPGVITPGQCKIGIMPGHIHKPGKIGIVSRSGTLT
YEAVKQTTEVGLGQSTCIGIGGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGAS
APAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVKTVRSPGDLGAAIAALVK

Sequences:

>Translated_291_residues
MSVLINKNTKVIVQGFTGQQGTFHATQMVEYGTQVVGGVTPGKGGTTHIDLPVFNTVADAVKATGADASVIYVPPPFAAD
AILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHADTVLIGPNCPGVITPGQCKIGIMPGHIHKPGKIGIVSRSGTLT
YEAVKQTTEVGLGQSTCIGIGGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGAS
APAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVKTVRSPGDLGAAIAALVK
>Mature_290_residues
SVLINKNTKVIVQGFTGQQGTFHATQMVEYGTQVVGGVTPGKGGTTHIDLPVFNTVADAVKATGADASVIYVPPPFAADA
ILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHADTVLIGPNCPGVITPGQCKIGIMPGHIHKPGKIGIVSRSGTLTY
EAVKQTTEVGLGQSTCIGIGGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGASA
PAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVKTVRSPGDLGAAIAALVK

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]

Homologues:

Organism=Homo sapiens, GI109452591, Length=288, Percent_Identity=66.3194444444444, Blast_Score=330, Evalue=8e-91,
Organism=Homo sapiens, GI38569423, Length=315, Percent_Identity=30.1587301587302, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI38569421, Length=315, Percent_Identity=30.1587301587302, Blast_Score=99, Evalue=5e-21,
Organism=Escherichia coli, GI1786949, Length=291, Percent_Identity=72.5085910652921, Blast_Score=424, Evalue=1e-120,
Organism=Caenorhabditis elegans, GI17550194, Length=290, Percent_Identity=63.7931034482759, Blast_Score=347, Evalue=4e-96,
Organism=Caenorhabditis elegans, GI17553126, Length=289, Percent_Identity=64.0138408304498, Blast_Score=340, Evalue=4e-94,
Organism=Caenorhabditis elegans, GI17551266, Length=313, Percent_Identity=30.6709265175719, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17557344, Length=260, Percent_Identity=31.1538461538462, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324716, Length=293, Percent_Identity=55.2901023890785, Blast_Score=293, Evalue=2e-80,
Organism=Drosophila melanogaster, GI21356559, Length=289, Percent_Identity=57.439446366782, Blast_Score=337, Evalue=6e-93,
Organism=Drosophila melanogaster, GI28574296, Length=294, Percent_Identity=61.9047619047619, Blast_Score=330, Evalue=6e-91,
Organism=Drosophila melanogaster, GI281363477, Length=310, Percent_Identity=28.7096774193548, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI281363475, Length=310, Percent_Identity=28.7096774193548, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI281363473, Length=310, Percent_Identity=28.7096774193548, Blast_Score=92, Evalue=5e-19,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017440
- InterPro:   IPR003781
- InterPro:   IPR005810
- InterPro:   IPR005811
- InterPro:   IPR016040
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 29516; Mature: 29384

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS01216 SUCCINYL_COA_LIG_1 ; PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLINKNTKVIVQGFTGQQGTFHATQMVEYGTQVVGGVTPGKGGTTHIDLPVFNTVADA
CEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHH
VKATGADASVIYVPPPFAADAILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHADTV
HHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEE
LIGPNCPGVITPGQCKIGIMPGHIHKPGKIGIVSRSGTLTYEAVKQTTEVGLGQSTCIGI
EECCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCCEEHHHHHHHHHHCCCCCEEEEC
GGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGAS
CCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
APAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVKTVRSPGDLGAAIAALVK
CCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCEECCCCHHHHHHHHHCC
>Mature Secondary Structure 
SVLINKNTKVIVQGFTGQQGTFHATQMVEYGTQVVGGVTPGKGGTTHIDLPVFNTVADA
EEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHH
VKATGADASVIYVPPPFAADAILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHADTV
HHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEE
LIGPNCPGVITPGQCKIGIMPGHIHKPGKIGIVSRSGTLTYEAVKQTTEVGLGQSTCIGI
EECCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCCEEHHHHHHHHHHCCCCCEEEEC
GGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGAS
CCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
APAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVKTVRSPGDLGAAIAALVK
CCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]