| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is ybhG [C]
Identifier: 84623107
GI number: 84623107
Start: 1579151
End: 1580254
Strand: Direct
Name: ybhG [C]
Synonym: XOO_1450
Alternate gene names: 84623107
Gene position: 1579151-1580254 (Clockwise)
Preceding gene: 84623106
Following gene: 84623108
Centisome position: 31.97
GC content: 69.57
Gene sequence:
>1104_bases ATGACGATGTTTTATCGCGGCCTGGTGTGCGGCACGTTGCTGCTGGCACTAGCCGCCTGCAGCGGGCCGGACGCGCCCGC CACCGAGACGCCGCGCGCGGTGAAGCTGGAGCGCTTTGGCGCCGGCAGCGATAGCCCACTGCAGGTGCCGGCGCTGGTGC GCCAGGAACAACGCGCCGAGTTGGCGTTCGAAGGGGCGGGCCGTCTTTCTGCGGTATTGGTGGATGTGGGCGACCGCGTG ACCCGCGGGCAGGTGCTGGCGCGCCTGGACGATGAACCGCTGCGGCTGCGCGAACAGCAGGCCGACGCACATGTGCGCGC GGCGCTGGCGCAGTCTGGCGAGCGGCAACTGCAACTGCGCCAACAACAGGCGATGTTCGATGACGGTGCCAGTTCTCATG CCACCTTGACTGCCGCGCGCGCAGCGGCCGATGCCGCCAGCGCGCAGTTGCAGGCGTCCAGGGCCGACCTGGCCATGGCC CGCCGTGGTACGCGTCTGGGCGAATTGCGCGCGCCGTTCGATGGCAGCGTGGTGGCACGTCTGCAACAGCCGCAGGCCGA TGTGGCAGCGGGGCAGACGGTGCTGCAGGTGGAAGGGCAGGGCCATGTGCAACTGGTCGCCACGCTGCCGGCAGCTGCCG GCCCCGATCTGGTGCCCGGGCAAACCGTGCGCGCGCGTCTGGCTGATGTAGGCGCCTTGCCGATCGCGCTGCGTGTGCGC AGTCTTTCCAACCGCCTGGACAATGCCGCAACGGTACAGGCGTTGCTCGAGCCGGTCGCTGTAGCGCCTGCGCTGCGCAG CGGCGACAGCGTGCTGCTGGCATTGCCCACACGTGCCGCTTCCACGCCCAGCGTGCCGTTGTCGGCGGTCGTGCCGTGGC TCAATCGGCAACAGGCCAGCGTGTTCGTTTACCAGCCGGCGAAGCGGGCCGTGATCGAACGTGCGGTCGACCTGGGGACG ATCGTCGGCGAGCGCGTCCAGATCCTGCGCGGGCTGCGTGCAGGCGAGCAGGTCGTCAGCGCCGGGGTGGGCTTTCTGGT GAGCGGCCAGCCGGTGACACCACTGCAGGTACAGACCCAACTGAGCGGAGGTCGCTTGCCATGA
Upstream 100 bases:
>100_bases AACGCCGAAGACAGCCCGCTGGTGGCACGCCGCGCGGTGGTCGGCGGCACCTTTGCACTGACCTACAGCCGCTGAGCGGC ACAGACCGGGGGATCGAAGG
Downstream 100 bases:
>100_bases AGCTGACCCAGATGGCGATGCGCTCGAGCCGGCTGACGTTGTTTGCGGCAGCGCTGATCCTGATCGGCGGCATCGTGGCG TTTGTCGGCTTCCCCTCGCA
Product: RND efflux membrane fusion protein
Products: NA
Alternate protein names: RND Efflux Membrane Fusion Protein; RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; Membrane-Fusion Protein; Membrane Fusion Protein; AcrA/E Family Efflux Transporter MFP Subunit; Protein Secretion Protein; Efflux Transmembrane Protein; Auxiliary Transport Protein MFP Family; RND/Acr Family Transmembrane Transporter; Lipoprotein
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MTMFYRGLVCGTLLLALAACSGPDAPATETPRAVKLERFGAGSDSPLQVPALVRQEQRAELAFEGAGRLSAVLVDVGDRV TRGQVLARLDDEPLRLREQQADAHVRAALAQSGERQLQLRQQQAMFDDGASSHATLTAARAAADAASAQLQASRADLAMA RRGTRLGELRAPFDGSVVARLQQPQADVAAGQTVLQVEGQGHVQLVATLPAAAGPDLVPGQTVRARLADVGALPIALRVR SLSNRLDNAATVQALLEPVAVAPALRSGDSVLLALPTRAASTPSVPLSAVVPWLNRQQASVFVYQPAKRAVIERAVDLGT IVGERVQILRGLRAGEQVVSAGVGFLVSGQPVTPLQVQTQLSGGRLP
Sequences:
>Translated_367_residues MTMFYRGLVCGTLLLALAACSGPDAPATETPRAVKLERFGAGSDSPLQVPALVRQEQRAELAFEGAGRLSAVLVDVGDRV TRGQVLARLDDEPLRLREQQADAHVRAALAQSGERQLQLRQQQAMFDDGASSHATLTAARAAADAASAQLQASRADLAMA RRGTRLGELRAPFDGSVVARLQQPQADVAAGQTVLQVEGQGHVQLVATLPAAAGPDLVPGQTVRARLADVGALPIALRVR SLSNRLDNAATVQALLEPVAVAPALRSGDSVLLALPTRAASTPSVPLSAVVPWLNRQQASVFVYQPAKRAVIERAVDLGT IVGERVQILRGLRAGEQVVSAGVGFLVSGQPVTPLQVQTQLSGGRLP >Mature_366_residues TMFYRGLVCGTLLLALAACSGPDAPATETPRAVKLERFGAGSDSPLQVPALVRQEQRAELAFEGAGRLSAVLVDVGDRVT RGQVLARLDDEPLRLREQQADAHVRAALAQSGERQLQLRQQQAMFDDGASSHATLTAARAAADAASAQLQASRADLAMAR RGTRLGELRAPFDGSVVARLQQPQADVAAGQTVLQVEGQGHVQLVATLPAAAGPDLVPGQTVRARLADVGALPIALRVRS LSNRLDNAATVQALLEPVAVAPALRSGDSVLLALPTRAASTPSVPLSAVVPWLNRQQASVFVYQPAKRAVIERAVDLGTI VGERVQILRGLRAGEQVVSAGVGFLVSGQPVTPLQVQTQLSGGRLP
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Membrane-associated. Inner membrane [C]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38400; Mature: 38269
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMFYRGLVCGTLLLALAACSGPDAPATETPRAVKLERFGAGSDSPLQVPALVRQEQRAE CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEECHHHHHHHHHHH LAFEGAGRLSAVLVDVGDRVTRGQVLARLDDEPLRLREQQADAHVRAALAQSGERQLQLR HHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH QQQAMFDDGASSHATLTAARAAADAASAQLQASRADLAMARRGTRLGELRAPFDGSVVAR HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH LQQPQADVAAGQTVLQVEGQGHVQLVATLPAAAGPDLVPGQTVRARLADVGALPIALRVR HCCCCHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH SLSNRLDNAATVQALLEPVAVAPALRSGDSVLLALPTRAASTPSVPLSAVVPWLNRQQAS HHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCE VFVYQPAKRAVIERAVDLGTIVGERVQILRGLRAGEQVVSAGVGFLVSGQPVTPLQVQTQ EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEE LSGGRLP CCCCCCC >Mature Secondary Structure TMFYRGLVCGTLLLALAACSGPDAPATETPRAVKLERFGAGSDSPLQVPALVRQEQRAE CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEECHHHHHHHHHHH LAFEGAGRLSAVLVDVGDRVTRGQVLARLDDEPLRLREQQADAHVRAALAQSGERQLQLR HHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH QQQAMFDDGASSHATLTAARAAADAASAQLQASRADLAMARRGTRLGELRAPFDGSVVAR HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH LQQPQADVAAGQTVLQVEGQGHVQLVATLPAAAGPDLVPGQTVRARLADVGALPIALRVR HCCCCHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH SLSNRLDNAATVQALLEPVAVAPALRSGDSVLLALPTRAASTPSVPLSAVVPWLNRQQAS HHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCE VFVYQPAKRAVIERAVDLGTIVGERVQILRGLRAGEQVVSAGVGFLVSGQPVTPLQVQTQ EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEE LSGGRLP CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA