| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is cusC [H]
Identifier: 84623105
GI number: 84623105
Start: 1576800
End: 1578269
Strand: Direct
Name: cusC [H]
Synonym: XOO_1448
Alternate gene names: 84623105
Gene position: 1576800-1578269 (Clockwise)
Preceding gene: 84623102
Following gene: 84623106
Centisome position: 31.92
GC content: 66.26
Gene sequence:
>1470_bases ATGATTCCACAAATTATTCCGCATCGTTGGTCTTGCGTGTGCCTGGTTGCCGCCAGTGCGGTGCTGGCGGCTGGGTGCTC GCTCACGCCGGCCTACCAGCGCCCGGCGGTCAGCGTGCCGGCCACGTTCGGCAGTCCGCAGGCTGCATCCGCGCCGGCAT CCGATCGGACCGACGCCAACGCGACGACCACCGTCGCTTTGAACGAACAAGCGCGCGCGTTCTTGCAGCGCTTCGCACCA GACCGCGACCTGCGGCCTCTGGTTGAACGTGCGTTGGCGCACAACGGCGATTTCCGCCGCGCTGCGTTGCAGGTAGAGCA GGCGCGTGCGCACTCCGGTATCGCGCAGGCGTCGCGACTGCCGGCGCTCGCCGTCGGCGCACAGCAGCTCCGGCAACATT TCGACAACCCGGCGCTGGATGCGCGGTACCAGCAGGACCTGGTGATTGCCAATGCCGGGATCGGCAATTTCGAAGTGGAT TTCTTTGGCAAGCTGCAGGCGATGTCCGAGGCCGCACGGCAGCGTTACCTGGCCAGCACCTACGGCCGCGATGCCGCGCG TGGTGCCCTGATTGCTGAGGTGCTGCGTGCCTACACCGCCGAGCGAACCACTGCGCAGGCGCTGCAACAGCTGCAATCGC TCGATGCCGACAGCGCTGCGTTGCTTGCCATTGCCGAGCGGCACTATCAGGTGGGGCTGATTGCGCGCGACGAGCGCGAT GCGCAGCGCCGTCAGGCCGATCAGGCCCATGTGGCGGCCTTGCAGGGCAACGACAATCACGCTGCGGCGGTGCGTGCGCT GCAGCTGCTGGTCGGCTACGACAGCACGCCGGTACCCGGCGATCTGCAGGGTCTGATCGCTGCTGATACGCCTGCCAGTG CCTGGCGCGCCCTGGATTCGTCGCTGTTGCTGCAACGCCCGGACATCCAGCAGGCCGAGCTGGAGTTGCGCGCGGCCAAT GCCGATATCGGCGCGGCGCGTGCGGCGTTTTTTCCGTCGATCACCTTGAGCAGCAGCGTGGGCACTGCCAGCGACGGATT GAACGGTTTGTTTTCTGCAGGCCACGGCTTGTGGAGCTTCATGCCGCAACTGAATCTGCCGTTGTTCGATGGTGGCCGTA ACCGCGCCAATCTGGAGCTGGCGCAGGTGCGCAAACGCGCCGATGTCGTCGCCTACGAGCAGGTAATCGAGTCTGCATTT CGTGAGGTCGCCAACGCGCTCGACGCGCACGCCACCTTGTCGCAGGCCGAGCCGCGCGCGCGTGAGCAGGTCGAACGCGA GCAACTGCGTCTTGCGCGAATGCACGCGCGCGTGGATGCCGGTCTGGAAGACCGCAGCGCGCTGCTGGCCGAGCGTACGC GCATCGCCCAGACCGAACTCGATTACCTGGACACCGCACGTCAGCGCGTGCTGAGCCGTATTGCGCTGTTTCAGGCGTTC TACGGCGTGCGCCTGCCCACCGCTTCCTGA
Upstream 100 bases:
>100_bases GTTGCCCTGTCGTCTCGATCAAATCTGGATAATTCCCGAAAACAACCTGGACGCTGCGGGTCGAGGATGTCGGTCGAGAT TGGCTCTGTGCTCCGACATC
Downstream 100 bases:
>100_bases CTTCCGCCGGAGACTTCCGATGAATGCAACGTCCTTCAATCGCCTGCGTGGCACCCGTGCCGTTCGCACCAGCGTCCTCG CCTGCATGACCGCCATTCCG
Product: outer membrane channel protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 489; Mature: 489
Protein sequence:
>489_residues MIPQIIPHRWSCVCLVAASAVLAAGCSLTPAYQRPAVSVPATFGSPQAASAPASDRTDANATTTVALNEQARAFLQRFAP DRDLRPLVERALAHNGDFRRAALQVEQARAHSGIAQASRLPALAVGAQQLRQHFDNPALDARYQQDLVIANAGIGNFEVD FFGKLQAMSEAARQRYLASTYGRDAARGALIAEVLRAYTAERTTAQALQQLQSLDADSAALLAIAERHYQVGLIARDERD AQRRQADQAHVAALQGNDNHAAAVRALQLLVGYDSTPVPGDLQGLIAADTPASAWRALDSSLLLQRPDIQQAELELRAAN ADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGLWSFMPQLNLPLFDGGRNRANLELAQVRKRADVVAYEQVIESAF REVANALDAHATLSQAEPRAREQVEREQLRLARMHARVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF YGVRLPTAS
Sequences:
>Translated_489_residues MIPQIIPHRWSCVCLVAASAVLAAGCSLTPAYQRPAVSVPATFGSPQAASAPASDRTDANATTTVALNEQARAFLQRFAP DRDLRPLVERALAHNGDFRRAALQVEQARAHSGIAQASRLPALAVGAQQLRQHFDNPALDARYQQDLVIANAGIGNFEVD FFGKLQAMSEAARQRYLASTYGRDAARGALIAEVLRAYTAERTTAQALQQLQSLDADSAALLAIAERHYQVGLIARDERD AQRRQADQAHVAALQGNDNHAAAVRALQLLVGYDSTPVPGDLQGLIAADTPASAWRALDSSLLLQRPDIQQAELELRAAN ADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGLWSFMPQLNLPLFDGGRNRANLELAQVRKRADVVAYEQVIESAF REVANALDAHATLSQAEPRAREQVEREQLRLARMHARVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF YGVRLPTAS >Mature_489_residues MIPQIIPHRWSCVCLVAASAVLAAGCSLTPAYQRPAVSVPATFGSPQAASAPASDRTDANATTTVALNEQARAFLQRFAP DRDLRPLVERALAHNGDFRRAALQVEQARAHSGIAQASRLPALAVGAQQLRQHFDNPALDARYQQDLVIANAGIGNFEVD FFGKLQAMSEAARQRYLASTYGRDAARGALIAEVLRAYTAERTTAQALQQLQSLDADSAALLAIAERHYQVGLIARDERD AQRRQADQAHVAALQGNDNHAAAVRALQLLVGYDSTPVPGDLQGLIAADTPASAWRALDSSLLLQRPDIQQAELELRAAN ADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGLWSFMPQLNLPLFDGGRNRANLELAQVRKRADVVAYEQVIESAF REVANALDAHATLSQAEPRAREQVEREQLRLARMHARVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF YGVRLPTAS
Specific function: Part of a cation efflux system that mediates resistance to copper and silver [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI1786785, Length=496, Percent_Identity=36.0887096774194, Blast_Score=223, Evalue=3e-59, Organism=Escherichia coli, GI2367348, Length=185, Percent_Identity=30.8108108108108, Blast_Score=75, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 - InterPro: IPR010131 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 52858; Mature: 52858
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPQIIPHRWSCVCLVAASAVLAAGCSLTPAYQRPAVSVPATFGSPQAASAPASDRTDAN CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ATTTVALNEQARAFLQRFAPDRDLRPLVERALAHNGDFRRAALQVEQARAHSGIAQASRL CEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC PALAVGAQQLRQHFDNPALDARYQQDLVIANAGIGNFEVDFFGKLQAMSEAARQRYLAST CHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH YGRDAARGALIAEVLRAYTAERTTAQALQQLQSLDADSAALLAIAERHYQVGLIARDERD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCHHH AQRRQADQAHVAALQGNDNHAAAVRALQLLVGYDSTPVPGDLQGLIAADTPASAWRALDS HHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHH SLLLQRPDIQQAELELRAANADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGLWSF HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCEECCCCCCCCCCHHHHHHHCCHHHHH MPQLNLPLFDGGRNRANLELAQVRKRADVVAYEQVIESAFREVANALDAHATLSQAEPRA HHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH REQVEREQLRLARMHARVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGVRLPTAS HHCCCCCCC >Mature Secondary Structure MIPQIIPHRWSCVCLVAASAVLAAGCSLTPAYQRPAVSVPATFGSPQAASAPASDRTDAN CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ATTTVALNEQARAFLQRFAPDRDLRPLVERALAHNGDFRRAALQVEQARAHSGIAQASRL CEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC PALAVGAQQLRQHFDNPALDARYQQDLVIANAGIGNFEVDFFGKLQAMSEAARQRYLAST CHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH YGRDAARGALIAEVLRAYTAERTTAQALQQLQSLDADSAALLAIAERHYQVGLIARDERD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCHHH AQRRQADQAHVAALQGNDNHAAAVRALQLLVGYDSTPVPGDLQGLIAADTPASAWRALDS HHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHH SLLLQRPDIQQAELELRAANADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGLWSF HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCEECCCCCCCCCCHHHHHHHCCHHHHH MPQLNLPLFDGGRNRANLELAQVRKRADVVAYEQVIESAFREVANALDAHATLSQAEPRA HHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH REQVEREQLRLARMHARVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGVRLPTAS HHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]