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The map label for this gene is yciR [C]

Identifier: 84623096

GI number: 84623096

Start: 1565038

End: 1567434

Strand: Direct

Name: yciR [C]

Synonym: XOO_1439

Alternate gene names: 84623096

Gene position: 1565038-1567434 (Clockwise)

Preceding gene: 84623095

Following gene: 84623097

Centisome position: 31.68

GC content: 64.08

Gene sequence:

>2397_bases
ATGGCGCAGGCAAACGGCGGTGGACAGATCATGCAACTGGTGCGTGGCTGGCTGACGCTTCCTCTAGCGCTCTTGATCGG
TATTGCCGTCTGCATGGCGGTGGTCTCGGCGCTGCTGATCGAAATTCAATCCGGCGCCACCGCCTGGATCGTTGGCCAGA
GCCATTGGTCCAACGCCCAGCAGGAATCGGTGTACTGGATGGAGCGCTACCTGGGCAGCGGCAATACAGCCGATCTGCAA
TCCGCTTGCCGCGTGCTGGAAGTGCCGCTGGGCGATCGTGCGGCGCGCGTGGCGATCGAACAACCGGTGATCGATTGGGA
CGCGGTCTACGCTGGTCTCGGCGCTGGTCGCAATGCCCGTGAGGACATGCCGCATATGGTGCGGCTGTATCGTTATGGGC
AGCAGTTTCCGTATCTCGGCGACGCCATCGCGCTGTGGAAGCGCACTGACGGCGACGTCCTGCAACTGAGTGCCTTGGCC
GATCGTGCCGCCTCGGTACAGGCCGCCACCCGGCCAGACCCGCGCGCATTGCAGGCACTGCGCGATGAGCTGCATGTGCT
GGATGGCCGCATGCGCCGCGATGCTTCCCAATTCCTGGGCTATCTGACCCGCTGCGCGCGGCTGCTGCACGATGTGATGG
TGGTCTGCAGCCTGGTCACCTTGCTGCTGGTGCTGATCACCTGCGTGCTGGCCATGCGGCGCATCCGCGATTACCTGCTG
TCGCACGAAGGCCGCTTCCGCACCGCGTTTCAGCAGGCGGCGCTGGGCATGGTCAAGTTCGATCTGCGCGGCAACGTGCT
CGATGCGAACGCGTCGATGGCCAACATCCTGCTGTACCGGCCGGAAGAGCTGCAGGCCTGCACGCTGGCCGAGGTGATGC
ACCCGGAAGACATCAAGCTGGACAGCCGCGGCATGCTCGATTGGCCCAAGCTGCTGCAGTCCGGCGAGAAGCGCTTCGTC
CGCGCCGACGGTGGGGTGATGTGGGGCCGCTGGAGCGCATCGCTGGTGGAGCCGGGGCCGGAAGAGCCGACCCTGGTGCT
GGCGGTGATCGAAGATGTGTCGCATGCGCACGACCTGGCCGACCAAGTGGCCTTCCATGCGTGCCACGATGCGCTGACGG
GGCTGATCAATCGGCATGAAATCGAGCGCCGGCTGCAGCTCCTGATCGAACTGCCGCGATCGCCGCAGATGTGCCATGCG
CTGTGCTTTGTCGACATGGACTATTTCAAGCTGGTCAACGACACCTTCGGGCATGCAGTCGGCGACAAGTTCCTGTGCCA
CTTTGCCGATGTGATCACCATGCAGTTGCGTCCCGGCGACTGGCTGGGGCGTCTGGGCGGCGATGAATTCGCCATCCTGT
TGGCCAATACCGATTTGCCGCAGGCGCGCGCCTTGCTGGAGGGCATGCACGCCGTACTCGGGCAACCGTGGAGCCATCAG
GGCGGGCGACCGCTGACGCCGAGCTGCAGTTTTGGTGTGGTGGAGATTCGCCAGTCCGCCAGTGACGTCAATAGCTTGAT
GACCGCTGCCGATCTGGCCTGTCATGCGGCCAAGGAAGAAGGGCGCAACCGCATTCGCTGCTTCAACGAAACCGATGTGG
CGCTGGCGCAGCGCCGCCACGACGGTGGCTGGATCAGTGCGGTGCAACTGGCCATCGCCGAAGAACGCTTGCTGTTGTAC
GCGCAGAAAATCCAGGTGCTGAGCGACCCGGGGCGGCTGCAGTACGAGGTGCTGGTGCGTATGCGTGCCAGCGACGGGCG
GGTGCTGAGTCCGGGTGAATTCCTGCCGGCCGTGGAGCGTTACGGCTTGGGGCGCATGGTCGATACCTATGTGCTGGAAT
CCTTGTGCGCGCAGCTGTCGGCCAACCCGATGCATCTGGCGATACTGGACCTGTGCCACGTCAATCTGTCTGCGCAATCG
ATCGCGCAACCGGATTTTCTCGACTTCGTCTGTGCCCTGTTCGAACGCTACCCGGCCCTGGTGCCGAAGCTGTGCATGGA
GATCACCGAGACCGCGGTCATCGGCGACCTGGAACATGCGCAACGTTTCGTGCAGAGCGTGCGTGCGCGTGGCTGCCACG
TGGCGCTGGACGATTTCGGCAGCGGCATGGCCTCGTTCGGTTATCTCAAGCAATTCACCGTGGACGTGTTGAAGATCGAC
TGCGGCTTCGTGCGCAACTACGCGCACGATGCGGTGGATCGTGCGGCGGTGCACTCGATCGCCCAGGTCGGGCTGGCGCT
AGGCATTGAAGTGGTGGCCGAAGGTGTGGAATCGGAGGCCGACATCCCCGGGCTGCGCGACGCTGGCGTAGGCCAGGTGC
AGGGCTTCAGTCTGCATCGTCCCTGTCCGCTGGAAGAGCTGCTGCACCCGCCGCAGCTGGTGCCCGTGTCTGGATAA

Upstream 100 bases:

>100_bases
AGCGGGTATTGCCATACAGACTGGGCCGTTGCGGCCGTTACTGTCTTCGGGCGCCCACTGGGCGCCTGAGTCGCACTGGG
GCGGCGAAGGACGGACGGCG

Downstream 100 bases:

>100_bases
GGCGTCTGAGCATGCGGCTGCACGCAGCATCAGACGGGCGCTGCGTGTACCCATCTGGCGAGTACCAACTGCCGATTGCC
GATTGCCGATTGCCGGTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 798; Mature: 797

Protein sequence:

>798_residues
MAQANGGGQIMQLVRGWLTLPLALLIGIAVCMAVVSALLIEIQSGATAWIVGQSHWSNAQQESVYWMERYLGSGNTADLQ
SACRVLEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAREDMPHMVRLYRYGQQFPYLGDAIALWKRTDGDVLQLSALA
DRAASVQAATRPDPRALQALRDELHVLDGRMRRDASQFLGYLTRCARLLHDVMVVCSLVTLLLVLITCVLAMRRIRDYLL
SHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGEKRFV
RADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHDLADQVAFHACHDALTGLINRHEIERRLQLLIELPRSPQMCHA
LCFVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSHQ
GGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLY
AQKIQVLSDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDLCHVNLSAQS
IAQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGMASFGYLKQFTVDVLKID
CGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLRDAGVGQVQGFSLHRPCPLEELLHPPQLVPVSG

Sequences:

>Translated_798_residues
MAQANGGGQIMQLVRGWLTLPLALLIGIAVCMAVVSALLIEIQSGATAWIVGQSHWSNAQQESVYWMERYLGSGNTADLQ
SACRVLEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAREDMPHMVRLYRYGQQFPYLGDAIALWKRTDGDVLQLSALA
DRAASVQAATRPDPRALQALRDELHVLDGRMRRDASQFLGYLTRCARLLHDVMVVCSLVTLLLVLITCVLAMRRIRDYLL
SHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGEKRFV
RADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHDLADQVAFHACHDALTGLINRHEIERRLQLLIELPRSPQMCHA
LCFVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSHQ
GGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLY
AQKIQVLSDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDLCHVNLSAQS
IAQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGMASFGYLKQFTVDVLKID
CGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLRDAGVGQVQGFSLHRPCPLEELLHPPQLVPVSG
>Mature_797_residues
AQANGGGQIMQLVRGWLTLPLALLIGIAVCMAVVSALLIEIQSGATAWIVGQSHWSNAQQESVYWMERYLGSGNTADLQS
ACRVLEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAREDMPHMVRLYRYGQQFPYLGDAIALWKRTDGDVLQLSALAD
RAASVQAATRPDPRALQALRDELHVLDGRMRRDASQFLGYLTRCARLLHDVMVVCSLVTLLLVLITCVLAMRRIRDYLLS
HEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGEKRFVR
ADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHDLADQVAFHACHDALTGLINRHEIERRLQLLIELPRSPQMCHAL
CFVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSHQG
GRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLYA
QKIQVLSDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDLCHVNLSAQSI
AQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGMASFGYLKQFTVDVLKIDC
GFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLRDAGVGQVQGFSLHRPCPLEELLHPPQLVPVSG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=28.3410138248848, Blast_Score=156, Evalue=6e-39,
Organism=Escherichia coli, GI1788381, Length=446, Percent_Identity=27.3542600896861, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1788849, Length=395, Percent_Identity=26.5822784810127, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI226510982, Length=391, Percent_Identity=29.923273657289, Blast_Score=127, Evalue=4e-30,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=25.1184834123223, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87082096, Length=249, Percent_Identity=30.9236947791165, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=27.9661016949153, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=28.8617886178862, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=35.7615894039735, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=33.1428571428571, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=32.2981366459627, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=317, Percent_Identity=28.391167192429, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=28.0487804878049, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1789650, Length=446, Percent_Identity=24.2152466367713, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=33.5403726708075, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788502, Length=213, Percent_Identity=26.2910798122066, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1786584, Length=161, Percent_Identity=32.9192546583851, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI87081845, Length=213, Percent_Identity=26.7605633802817, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786507, Length=215, Percent_Identity=28.8372093023256, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787055, Length=244, Percent_Identity=25.4098360655738, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=32.4175824175824, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=28.1609195402299, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=112, Percent_Identity=39.2857142857143, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=31.8471337579618, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87885; Mature: 87754

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQANGGGQIMQLVRGWLTLPLALLIGIAVCMAVVSALLIEIQSGATAWIVGQSHWSNAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCH
QESVYWMERYLGSGNTADLQSACRVLEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAR
HHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCH
EDMPHMVRLYRYGQQFPYLGDAIALWKRTDGDVLQLSALADRAASVQAATRPDPRALQAL
HHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHH
RDELHVLDGRMRRDASQFLGYLTRCARLLHDVMVVCSLVTLLLVLITCVLAMRRIRDYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEELQACTLAEVMHPEDIKL
CCCCHHHHHHHHHHHHHEEEECCCCEEECCCCEEEEEEECCCHHHHHHHHHHCCCCCCCC
DSRGMLDWPKLLQSGEKRFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHDLA
CCCCCCHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH
DQVAFHACHDALTGLINRHEIERRLQLLIELPRSPQMCHALCFVDMDYFKLVNDTFGHAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSHQ
HHHHHHHHHHHHHEEECCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
GGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETDVALAQRRH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCC
DGGWISAVQLAIAEERLLLYAQKIQVLSDPGRLQYEVLVRMRASDGRVLSPGEFLPAVER
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHHHHH
YGLGRMVDTYVLESLCAQLSANPMHLAILDLCHVNLSAQSIAQPDFLDFVCALFERYPAL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHH
VPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGMASFGYLKQFTVDVLKID
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHH
CGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLRDAGVGQVQGFSLHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PCPLEELLHPPQLVPVSG
CCCHHHHCCCCCEECCCC
>Mature Secondary Structure 
AQANGGGQIMQLVRGWLTLPLALLIGIAVCMAVVSALLIEIQSGATAWIVGQSHWSNAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCH
QESVYWMERYLGSGNTADLQSACRVLEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAR
HHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCH
EDMPHMVRLYRYGQQFPYLGDAIALWKRTDGDVLQLSALADRAASVQAATRPDPRALQAL
HHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHH
RDELHVLDGRMRRDASQFLGYLTRCARLLHDVMVVCSLVTLLLVLITCVLAMRRIRDYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEELQACTLAEVMHPEDIKL
CCCCHHHHHHHHHHHHHEEEECCCCEEECCCCEEEEEEECCCHHHHHHHHHHCCCCCCCC
DSRGMLDWPKLLQSGEKRFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHDLA
CCCCCCHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH
DQVAFHACHDALTGLINRHEIERRLQLLIELPRSPQMCHALCFVDMDYFKLVNDTFGHAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSHQ
HHHHHHHHHHHHHEEECCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
GGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETDVALAQRRH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCC
DGGWISAVQLAIAEERLLLYAQKIQVLSDPGRLQYEVLVRMRASDGRVLSPGEFLPAVER
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHHHHH
YGLGRMVDTYVLESLCAQLSANPMHLAILDLCHVNLSAQSIAQPDFLDFVCALFERYPAL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHH
VPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGMASFGYLKQFTVDVLKID
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHH
CGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLRDAGVGQVQGFSLHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PCPLEELLHPPQLVPVSG
CCCHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]