| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is insI1 [C]
Identifier: 84623075
GI number: 84623075
Start: 1543116
End: 1544090
Strand: Direct
Name: insI1 [C]
Synonym: XOO_1418
Alternate gene names: 84623075
Gene position: 1543116-1544090 (Clockwise)
Preceding gene: 84623074
Following gene: 84623078
Centisome position: 31.24
GC content: 62.67
Gene sequence:
>975_bases ATGTCATCCAGCCGCCTTGACCTATCGGAACGATACCGTCTGCATGCGTTATATGAAACCGGGATGTCGATGCGCGCCAT CGCCGATGTATTGGCGCGTGCGCCCAGCACGATCAGTCGTGAGCTGCGCCGCAATCAGCACGCTGCGCGGTACCAGCCCG ATCACGCGCAGCGCATCAGCGCCCATCGGCGCACGCACGCCAGCCGGCGTCCACGCATCGACGCTGAGCGTATCGGCCAG ATCGAGGTCCTGCTGAGGGAGGACGCCAGTCCCGAACAGATCGCCGGCCGCACCGGCTTGGCCAGTCACGCATGGATCTA TCGGCACATCGACGCCGACCAGAAGCTTGGTGGTCAGCTGTTCATGCATCTACGCAAACGCCGCCGCAAGCGCCGTCGGC GTGGCGTGCGCGATGGCCGCGGGCAGCTGACGCATCGGCGCAGCTGGACACAGCGCCCAAGCGTGGTTGAGCAGCGAAGC CGCATCGGCGACTGGGAGCTGGAGACCATCAGGGCCTCGCACGGACGCGCCGTGGTGGTCAGCATGACCGAACGCTGCAG TGGCCTGCATCTGCTGGCTTATTCACCCGACGGCACCGCCGAGAACGTGCGCAACGCCATTGTCCAGCGACTGGGCGGCC TGCGCCATGCAGTTCACACCCTCACCGCCGACAACGGCAAGGAGTTCGCCGATCATCGGCTCATTGCCGCCTGCCTGCAG AGCGATTTCTATTTCGCAGATCCCTACTGCCCATGGCAGCGCGGCAGCAACGAGAATGCCAACGGATTGACACGCCAATA CTTGCCACGGCAGACCGATGTCAGCACGCATCACCGATGCGCACCTGCGATGGATCGAGCAGCGGCTCTACAATCGTCCG CGCAAGATACTTGGATTCAAAACGCCCCTCGAAGTCTTCTCCGAGGAGGTCCTCAAAAGCGTTGCGAATCAGAGTTGAAT TCGCCATTGAAATAA
Upstream 100 bases:
>100_bases TCTGGGAGAGGGCGGCTTCAACTCTGGATCGCAACACCAACGGTTGTGACGTGGTCCAGGCGACCTGACCTGAGCACTTC ACCGCCAAGTGGAGTTGCCC
Downstream 100 bases:
>100_bases CCCATCACGATGCGCCGCGTTCTTTCGCATGCGGTGCGTGCGTCTCGCTATTTCCATCGCATGCCGCGCATGGGGAAGAT GCCGGCGTCGTTGCCAGGCA
Product: IS1112 transposase
Products: NA
Alternate protein names: Transposon TN4551 [H]
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSSSRLDLSERYRLHALYETGMSMRAIADVLARAPSTISRELRRNQHAARYQPDHAQRISAHRRTHASRRPRIDAERIGQ IEVLLREDASPEQIAGRTGLASHAWIYRHIDADQKLGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRS RIGDWELETIRASHGRAVVVSMTERCSGLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFADHRLIAACLQ SDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTHHRCAPAMDRAAALQSSAQDTWIQNAPRSLLRGGPQKRCESELN SPLK
Sequences:
>Translated_324_residues MSSSRLDLSERYRLHALYETGMSMRAIADVLARAPSTISRELRRNQHAARYQPDHAQRISAHRRTHASRRPRIDAERIGQ IEVLLREDASPEQIAGRTGLASHAWIYRHIDADQKLGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRS RIGDWELETIRASHGRAVVVSMTERCSGLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFADHRLIAACLQ SDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTHHRCAPAMDRAAALQSSAQDTWIQNAPRSLLRGGPQKRCESELN SPLK >Mature_323_residues SSSRLDLSERYRLHALYETGMSMRAIADVLARAPSTISRELRRNQHAARYQPDHAQRISAHRRTHASRRPRIDAERIGQI EVLLREDASPEQIAGRTGLASHAWIYRHIDADQKLGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRSR IGDWELETIRASHGRAVVVSMTERCSGLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFADHRLIAACLQS DFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTHHRCAPAMDRAAALQSSAQDTWIQNAPRSLLRGGPQKRCESELNS PLK
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG2826
COG function: function code L; Transposase and inactivated derivatives, IS30 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
Organism=Escherichia coli, GI1786450, Length=333, Percent_Identity=28.8288288288288, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1790736, Length=333, Percent_Identity=28.8288288288288, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787671, Length=333, Percent_Identity=28.8288288288288, Blast_Score=100, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR001584 - InterPro: IPR012337 - InterPro: IPR001598 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 36974; Mature: 36843
Theoretical pI: Translated: 11.40; Mature: 11.40
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSRLDLSERYRLHALYETGMSMRAIADVLARAPSTISRELRRNQHAARYQPDHAQRIS CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH AHRRTHASRRPRIDAERIGQIEVLLREDASPEQIAGRTGLASHAWIYRHIDADQKLGGQL HHHHHHHHCCCCCCHHHCCCEEEEEECCCCHHHHHCCCCCCHHHHHEEECCCHHHHHHHH FMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRSRIGDWELETIRASHGRAVVV HHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCEEEE SMTERCSGLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFADHRLIAACLQ EEHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTHHRCAPAMDRAAALQSSAQDTWIQ CCCEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NAPRSLLRGGPQKRCESELNSPLK HCCHHHHCCCCHHHHHHHHCCCCC >Mature Secondary Structure SSSRLDLSERYRLHALYETGMSMRAIADVLARAPSTISRELRRNQHAARYQPDHAQRIS CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH AHRRTHASRRPRIDAERIGQIEVLLREDASPEQIAGRTGLASHAWIYRHIDADQKLGGQL HHHHHHHHCCCCCCHHHCCCEEEEEECCCCHHHHHCCCCCCHHHHHEEECCCHHHHHHHH FMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRSRIGDWELETIRASHGRAVVV HHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCEEEE SMTERCSGLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFADHRLIAACLQ EEHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTHHRCAPAMDRAAALQSSAQDTWIQ CCCEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NAPRSLLRGGPQKRCESELNSPLK HCCHHHHCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2820936 [H]