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The map label for this gene is ybhD [H]

Identifier: 84622666

GI number: 84622666

Start: 1102686

End: 1103588

Strand: Direct

Name: ybhD [H]

Synonym: XOO_1009

Alternate gene names: 84622666

Gene position: 1102686-1103588 (Clockwise)

Preceding gene: 84622663

Following gene: 84622671

Centisome position: 22.32

GC content: 62.57

Gene sequence:

>903_bases
GTGACCATCAAATTCGACCTCAACGATCTACAGGCATTCCGTGCGGTTGCCGAAAACGGCAGCTTTCGCCGCGCTGCAGA
ACGTATTCGCATCACGCAGCCGGCGCTCAGCCGCAGGATCGACAAGCTCGAGTCGGCGTTGAACGTCAAGCTGTTCGAGC
GCACCACGCGCAAGGTCTCGCTCACCACCGTCGGCCAGGCCTTCATGCCGCAGGTCGAGCGCATGCTCGATGATCTGGAC
ATGGCACTGATGAGCATCGGCGATGCAGGTTCCAGAAGGATGGGCACGGTGACCGTGGCGTGTGTGCCATCTGCGGCGTA
CTACTTCATGCCGCAGGCGATCCACGGGTTGCATCAGCTGTTTCCGAAAATCCGCATCAGTTTGCTCGATGGCAGTGCCA
GTCACGTCAGTGCGGCAGTGGCCTCCGGTGAAGCGGATTTTGGCGTCAGCTTCAGCGGCAACCTGGCGCCGGAGGTGGAG
TTCGAACTGTTGTTGCAAGAGCGCTATGTGATTGCCTGCCGCCAAGACCATCCCTTGTCCGGTCGCGCACAGGTCAGCTG
GCAGGAGGTCTACGGGTACGACTACATCACGCTGGACAAGACATCGGGCAACCGGCTACTGCTGGATCGGGCGCTGTCTG
CATTCACGCCGGACAAGCCGAGCATCTGCGAGACCCGGCATGTCACCACGTTGCTGGGATTGGTGGAGGCCGGCGTCGGT
ATTGCCGCCGTGCCGTCGATCGCAATGCCGTCCGGCCCGCATCCGGTGTTGGCGACGGTGCCGCTGGTCGAACCGGAGGT
GTCGCGCAACGTAGGGATCCTCAAACGCCGCGGACGGACGCTGACACCGACCGCGCTGGAACTGGCGGAACTGGTGCGAC
GGATGCCTGCACGCTCACGGTGA

Upstream 100 bases:

>100_bases
AAGGCGCCCGAATGCAGTGACTCCTTCAGCGTCAGACGCAGCACCGCAGGCAAGCGTCTATGCTATGGCGCCCGCCATCG
AATACTGAAGCCGCGGCACT

Downstream 100 bases:

>100_bases
CGCCGGGTCCAGGCCAGTCACGCGCGCAACCGCCTGCGCATCACCCGACTGCAGGTACGCAAGCAGGCGCTTGGCCGCCT
CGGGATGCTCCGCGTTGACC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTIKFDLNDLQAFRAVAENGSFRRAAERIRITQPALSRRIDKLESALNVKLFERTTRKVSLTTVGQAFMPQVERMLDDLD
MALMSIGDAGSRRMGTVTVACVPSAAYYFMPQAIHGLHQLFPKIRISLLDGSASHVSAAVASGEADFGVSFSGNLAPEVE
FELLLQERYVIACRQDHPLSGRAQVSWQEVYGYDYITLDKTSGNRLLLDRALSAFTPDKPSICETRHVTTLLGLVEAGVG
IAAVPSIAMPSGPHPVLATVPLVEPEVSRNVGILKRRGRTLTPTALELAELVRRMPARSR

Sequences:

>Translated_300_residues
MTIKFDLNDLQAFRAVAENGSFRRAAERIRITQPALSRRIDKLESALNVKLFERTTRKVSLTTVGQAFMPQVERMLDDLD
MALMSIGDAGSRRMGTVTVACVPSAAYYFMPQAIHGLHQLFPKIRISLLDGSASHVSAAVASGEADFGVSFSGNLAPEVE
FELLLQERYVIACRQDHPLSGRAQVSWQEVYGYDYITLDKTSGNRLLLDRALSAFTPDKPSICETRHVTTLLGLVEAGVG
IAAVPSIAMPSGPHPVLATVPLVEPEVSRNVGILKRRGRTLTPTALELAELVRRMPARSR
>Mature_299_residues
TIKFDLNDLQAFRAVAENGSFRRAAERIRITQPALSRRIDKLESALNVKLFERTTRKVSLTTVGQAFMPQVERMLDDLDM
ALMSIGDAGSRRMGTVTVACVPSAAYYFMPQAIHGLHQLFPKIRISLLDGSASHVSAAVASGEADFGVSFSGNLAPEVEF
ELLLQERYVIACRQDHPLSGRAQVSWQEVYGYDYITLDKTSGNRLLLDRALSAFTPDKPSICETRHVTTLLGLVEAGVGI
AAVPSIAMPSGPHPVLATVPLVEPEVSRNVGILKRRGRTLTPTALELAELVRRMPARSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=41.8118466898955, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=32.6460481099656, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=29.9319727891156, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=27.4725274725275, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787601, Length=302, Percent_Identity=27.1523178807947, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789204, Length=239, Percent_Identity=25.5230125523013, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=26.7206477732794, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=30.8988764044944, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=27.4900398406374, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787530, Length=265, Percent_Identity=23.3962264150943, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=26.4227642276423, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367136, Length=240, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790208, Length=266, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787589, Length=154, Percent_Identity=33.1168831168831, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082132, Length=153, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787128, Length=126, Percent_Identity=30.952380952381, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=26.0355029585799, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788296, Length=217, Percent_Identity=23.963133640553, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=177, Percent_Identity=25.4237288135593, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786713, Length=196, Percent_Identity=31.1224489795918, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789173, Length=147, Percent_Identity=29.9319727891156, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=123, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=253, Percent_Identity=22.9249011857708, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786508, Length=184, Percent_Identity=26.6304347826087, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=23.5537190082645, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786448, Length=107, Percent_Identity=33.6448598130841, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32872; Mature: 32741

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKFDLNDLQAFRAVAENGSFRRAAERIRITQPALSRRIDKLESALNVKLFERTTRKVS
CEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTTVGQAFMPQVERMLDDLDMALMSIGDAGSRRMGTVTVACVPSAAYYFMPQAIHGLHQL
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
FPKIRISLLDGSASHVSAAVASGEADFGVSFSGNLAPEVEFELLLQERYVIACRQDHPLS
HHHHEEEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCEEEEECCCCCCC
GRAQVSWQEVYGYDYITLDKTSGNRLLLDRALSAFTPDKPSICETRHVTTLLGLVEAGVG
CCCEEEHHHHCCCEEEEEECCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
IAAVPSIAMPSGPHPVLATVPLVEPEVSRNVGILKRRGRTLTPTALELAELVRRMPARSR
CEECCCCCCCCCCCCEEEEECCCCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TIKFDLNDLQAFRAVAENGSFRRAAERIRITQPALSRRIDKLESALNVKLFERTTRKVS
EEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTTVGQAFMPQVERMLDDLDMALMSIGDAGSRRMGTVTVACVPSAAYYFMPQAIHGLHQL
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
FPKIRISLLDGSASHVSAAVASGEADFGVSFSGNLAPEVEFELLLQERYVIACRQDHPLS
HHHHEEEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCEEEEECCCCCCC
GRAQVSWQEVYGYDYITLDKTSGNRLLLDRALSAFTPDKPSICETRHVTTLLGLVEAGVG
CCCEEEHHHHCCCEEEEEECCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
IAAVPSIAMPSGPHPVLATVPLVEPEVSRNVGILKRRGRTLTPTALELAELVRRMPARSR
CEECCCCCCCCCCCCEEEEECCCCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]