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The map label for this gene is agmR [H]

Identifier: 84622663

GI number: 84622663

Start: 1100049

End: 1100687

Strand: Direct

Name: agmR [H]

Synonym: XOO_1006

Alternate gene names: 84622663

Gene position: 1100049-1100687 (Clockwise)

Preceding gene: 84622662

Following gene: 84622666

Centisome position: 22.27

GC content: 66.51

Gene sequence:

>639_bases
ATGGCCGATCTCACCATTCTCGTCGCCGACGACCACCCGCTGTTCCGCGCTGCCGTGCTCCATGTGCTGCAGCAGACCCT
GCCGCAGGCCAATGTGGTGGAAGCGTCCAGCGCCGCCACCTTGAGCGCGATGCTGCGTTCGCACCCGCAGGCCGAGTTGG
TGCTGCTGGATCTGGCCATGCCCGGTGCGCGCGGTTTTTCGGCGCTGCTGCATGTGCGTGGCGAGCACCCGGACATTCCG
GTGGTGGTGATCTCCTCCAACGATCATCCGCGCGTGATCCGGCGTGCGCAGCAGTTCGGCGCGGCCGGTTTCATTCCCAA
ATCCACCCCGGCCGAATCGATCGGCACCGCCGTGGCCAGCGTGCTCGATGGCGGCACCTGGTTCCCGCCAATGACCGCCG
AGCGCTCGGAGGCGGATGCGCAACTGGCCTCCAAACTCGCTCAGCTCACGCCGCAGCAGTTTCGCGTGTTGCTGAGCCTG
GCCGATGGCCTGCTCAACAAGCAGATCGCACACGAACTGGGCCTGGCCGAGAACACCGTCAAGGTGCACGTCACCGCCAT
CCTGAAGAAGCTCGACTGCTACAGCCGCACGCAGGCGGCAGTGCTGGTCAAGGCGCTGGAGCCGGAAGGCGAGGGCTGA

Upstream 100 bases:

>100_bases
CAAACTCAAACGCCGCCAGTTTCTGGAGGCCTGGCGCGCGAGCACGCAGCCGCCGCGCTAGGGCAAGGCAGCGGCGGCGG
CCATGTGCCAGACTTGGCGC

Downstream 100 bases:

>100_bases
TCCGGCATTGAGCTACGGGATGCGGCGCATTGCGGTCTGCAGTCCGCACAACGCACAAGGGATGCAGAGATGACGGCCGC
ACATCAGTAAGGGTGATCAA

Product: LuxR/UhpA family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRSHPQAELVLLDLAMPGARGFSALLHVRGEHPDIP
VVVISSNDHPRVIRRAQQFGAAGFIPKSTPAESIGTAVASVLDGGTWFPPMTAERSEADAQLASKLAQLTPQQFRVLLSL
ADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVLVKALEPEGEG

Sequences:

>Translated_212_residues
MADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRSHPQAELVLLDLAMPGARGFSALLHVRGEHPDIP
VVVISSNDHPRVIRRAQQFGAAGFIPKSTPAESIGTAVASVLDGGTWFPPMTAERSEADAQLASKLAQLTPQQFRVLLSL
ADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVLVKALEPEGEG
>Mature_211_residues
ADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRSHPQAELVLLDLAMPGARGFSALLHVRGEHPDIPV
VVISSNDHPRVIRRAQQFGAAGFIPKSTPAESIGTAVASVLDGGTWFPPMTAERSEADAQLASKLAQLTPQQFRVLLSLA
DGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVLVKALEPEGEG

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=197, Percent_Identity=29.4416243654822, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=28.5, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789937, Length=201, Percent_Identity=27.363184079602, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787473, Length=204, Percent_Identity=33.8235294117647, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=26.1538461538462, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788222, Length=195, Percent_Identity=23.5897435897436, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788546, Length=196, Percent_Identity=22.9591836734694, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790102, Length=194, Percent_Identity=28.3505154639175, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22552; Mature: 22421

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRSHPQAELVLLDLAM
CCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC
PGARGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFGAAGFIPKSTPAESIGTAVAS
CCCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VLDGGTWFPPMTAERSEADAQLASKLAQLTPQQFRVLLSLADGLLNKQIAHELGLAENTV
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KVHVTAILKKLDCYSRTQAAVLVKALEPEGEG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRSHPQAELVLLDLAM
CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC
PGARGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFGAAGFIPKSTPAESIGTAVAS
CCCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VLDGGTWFPPMTAERSEADAQLASKLAQLTPQQFRVLLSLADGLLNKQIAHELGLAENTV
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KVHVTAILKKLDCYSRTQAAVLVKALEPEGEG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]