| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84622662
Identifier: 84622662
GI number: 84622662
Start: 1098960
End: 1100009
Strand: Direct
Name: 84622662
Synonym: XOO_1005
Alternate gene names: NA
Gene position: 1098960-1100009 (Clockwise)
Preceding gene: 84622661
Following gene: 84622663
Centisome position: 22.25
GC content: 65.52
Gene sequence:
>1050_bases ATGCGGCTGATGTGGATGTTGGTCGTGCTGCTGATCCATGGCATCGCTTACGCAGAGCCCGGCCAGGTGCGCCGCTTTCC TGCACAGGGTCGCGTGCATGTGCAGTTGCGTGTACAGGGCTCCACCGATCTGGAAGTATTCGGCGCCGTCATCCAGGACT ACCAGCGGCTGCATCCGGGCACCGAGGTGATCTACGAAGACGTGATTGCCTGGGATATCTACGATCACTACGTGCACCCT GCCCGAGATGCGATCAAGGCAGACATGCTGATCAGCGCCAGCATGGATCTGCAGACCAAGCTGGTGAACGATGGCCACGC GCTTGCGCATCGGTCCGCACAGACCGCAGCATTGCCGGCGTGGGCGCAATGGCGCCATGAAGTCTTCGGCATCAGTTACG AGCCGGTGGCCATCGTCTACAACACGCGCAATCTGGATGCCGCCCGCGTGCCGCGCACGCGCCGGCAATTGCTGGCGCTG TTGCGCGCCCCCGATGCGCCGCTGCGCGGCAAGGTGGGCACCTACAATGTCGAACGCAGCGGCGTGGGGTATCTGTTCGC CACCCAGGACGGTCAGGTGGGCAGCATCGCCGGTGCATTGCTGGCGGCGCTGGGCACCAACCGGGTGGCGTTGGAAGAAC GCACCGGCACCTTGCTCGACCGCGTCAGCCGTGGCGAGTTGCTGCTGGCCTACAACGTGCTCGGCTCCTACGCGCAGGCC CGCATCGATGCCGGCGCGCCGCTGGGCATCGTGCAGCCCCAGGACTACACGCTGGTGGCGTTGCGTACCGCGGTGATTCC CAAGACTGCGCCACACGCGCTGGAAGCACGCAGATTTCTCGACTATCTACTCTCACCGCGCGGCCAGCAGGTGCTTTCGC GTGAGGCGCGCTTGATGCCGATCCTGCAGGCCGCCGGTGGCCGTGGTGGTTCGGCGCAGCCACCGTTCCGCCCGATTCCA CTCGGCCCCGGTCTGCTGGTGTATCTGGACAAACTCAAACGCCGCCAGTTTCTGGAGGCCTGGCGCGCGAGCACGCAGCC GCCGCGCTAG
Upstream 100 bases:
>100_bases TCAAACGTGTGGTGGAAGCACATGGCGGGCGTATCGATCTGGCCAACCGTATCGGCGGCGGCTTGATCGCGTCGCTGCAT TTTCCTGGAGGACCTGCGTG
Downstream 100 bases:
>100_bases GGCAAGGCAGCGGCGGCGGCCATGTGCCAGACTTGGCGCATGGCCGATCTCACCATTCTCGTCGCCGACGACCACCCGCT GTTCCGCGCTGCCGTGCTCC
Product: periplasmic iron-binding protein
Products: NA
Alternate protein names: ABC-Type Fe3+ Transporter Periplasmic Protein; Iron ABC Transporter; HAMP Domain-Containing; Two-Component Sensor Histidine Kinase
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MRLMWMLVVLLIHGIAYAEPGQVRRFPAQGRVHVQLRVQGSTDLEVFGAVIQDYQRLHPGTEVIYEDVIAWDIYDHYVHP ARDAIKADMLISASMDLQTKLVNDGHALAHRSAQTAALPAWAQWRHEVFGISYEPVAIVYNTRNLDAARVPRTRRQLLAL LRAPDAPLRGKVGTYNVERSGVGYLFATQDGQVGSIAGALLAALGTNRVALEERTGTLLDRVSRGELLLAYNVLGSYAQA RIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHALEARRFLDYLLSPRGQQVLSREARLMPILQAAGGRGGSAQPPFRPIP LGPGLLVYLDKLKRRQFLEAWRASTQPPR
Sequences:
>Translated_349_residues MRLMWMLVVLLIHGIAYAEPGQVRRFPAQGRVHVQLRVQGSTDLEVFGAVIQDYQRLHPGTEVIYEDVIAWDIYDHYVHP ARDAIKADMLISASMDLQTKLVNDGHALAHRSAQTAALPAWAQWRHEVFGISYEPVAIVYNTRNLDAARVPRTRRQLLAL LRAPDAPLRGKVGTYNVERSGVGYLFATQDGQVGSIAGALLAALGTNRVALEERTGTLLDRVSRGELLLAYNVLGSYAQA RIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHALEARRFLDYLLSPRGQQVLSREARLMPILQAAGGRGGSAQPPFRPIP LGPGLLVYLDKLKRRQFLEAWRASTQPPR >Mature_349_residues MRLMWMLVVLLIHGIAYAEPGQVRRFPAQGRVHVQLRVQGSTDLEVFGAVIQDYQRLHPGTEVIYEDVIAWDIYDHYVHP ARDAIKADMLISASMDLQTKLVNDGHALAHRSAQTAALPAWAQWRHEVFGISYEPVAIVYNTRNLDAARVPRTRRQLLAL LRAPDAPLRGKVGTYNVERSGVGYLFATQDGQVGSIAGALLAALGTNRVALEERTGTLLDRVSRGELLLAYNVLGSYAQA RIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHALEARRFLDYLLSPRGQQVLSREARLMPILQAAGGRGGSAQPPFRPIP LGPGLLVYLDKLKRRQFLEAWRASTQPPR
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38564; Mature: 38564
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLMWMLVVLLIHGIAYAEPGQVRRFPAQGRVHVQLRVQGSTDLEVFGAVIQDYQRLHPG CHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC TEVIYEDVIAWDIYDHYVHPARDAIKADMLISASMDLQTKLVNDGHALAHRSAQTAALPA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCEEEECCCCHHHHHCCCCHHCCCH WAQWRHEVFGISYEPVAIVYNTRNLDAARVPRTRRQLLALLRAPDAPLRGKVGTYNVERS HHHHHHHHCCCCCCCEEEEEECCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC GVGYLFATQDGQVGSIAGALLAALGTNRVALEERTGTLLDRVSRGELLLAYNVLGSYAQA CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEEEHHHHHHHHHH RIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHALEARRFLDYLLSPRGQQVLSREARLMP HCCCCCCCCEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH ILQAAGGRGGSAQPPFRPIPLGPGLLVYLDKLKRRQFLEAWRASTQPPR HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRLMWMLVVLLIHGIAYAEPGQVRRFPAQGRVHVQLRVQGSTDLEVFGAVIQDYQRLHPG CHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC TEVIYEDVIAWDIYDHYVHPARDAIKADMLISASMDLQTKLVNDGHALAHRSAQTAALPA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCEEEECCCCHHHHHCCCCHHCCCH WAQWRHEVFGISYEPVAIVYNTRNLDAARVPRTRRQLLALLRAPDAPLRGKVGTYNVERS HHHHHHHHCCCCCCCEEEEEECCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC GVGYLFATQDGQVGSIAGALLAALGTNRVALEERTGTLLDRVSRGELLLAYNVLGSYAQA CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEEEHHHHHHHHHH RIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHALEARRFLDYLLSPRGQQVLSREARLMP HCCCCCCCCEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH ILQAAGGRGGSAQPPFRPIPLGPGLLVYLDKLKRRQFLEAWRASTQPPR HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA