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The map label for this gene is bphB [H]

Identifier: 84621921

GI number: 84621921

Start: 289694

End: 291598

Strand: Direct

Name: bphB [H]

Synonym: XOO_0264

Alternate gene names: 84621921

Gene position: 289694-291598 (Clockwise)

Preceding gene: 84621920

Following gene: 84621927

Centisome position: 5.86

GC content: 66.35

Gene sequence:

>1905_bases
GTGAATCAGCCTACCGAACCCCTGGATATGGATGTCTGCGCACGGGAGCCGATCCACATTCCCGGCCTGATCCAGCCCTA
CGGCGTGTTGCTCGTAATCGAACCGGCCGATGGCCGCATCGTGCAGGCCAGCAGCACCGCCGCCGAGTTGCTCGGCGTGC
CGATGGATGCGCTGCTGGGCATGGCCTACACCCAGGTGCTGGAGATGCCGGACGCACAACCTGGTGCAGTGGACGATCAA
CCCCAGCATGTGCTGCATGCCGATGTGCGCTTCCCGCAGCGCAGTGCGCCCACCGATCACCCCTGGGTCGCTGCCTGGCA
TTTGTATCCGGAGCAATGGCTGATCGAGATCGAGCCGCGCGATGCGCGCCTGATGGATGTCACCCTGCGCGAAGCGCTGC
CGCTGTTGCGCAGCATCGAGCGCGATGCGGGCATTGAAGAAGCGTCAGTGCGCGCGGCCAAGGGCCTGCGCAGCATGATC
GGCTTCGACCGCGTGATGGTGTATCGCTTCGACGAAGAGTGGAATGGCGACGTCATCGCCGAAGCGCGCCAGCCCGAGCT
GGAGGCGTACCTGGGCCTGCATTACCCGGCCAGCGACATCCCGGCGCAGGCGCGCGCGCTGTACCTGCGCAACCGCGTGC
GCCAGATCGCCGATGTGCGCTATCAGCCCTCGCCGATCCAACCCACCTTGCACCCGCGCCTGGGTACACCGGTGGATCTG
AGCGATGTCAGCCTGCGCAGCGTCTCGCCGGTGCATCTGGAATACCTGGCCAACATGGGCGTCAGCGCCACCCTGGTGTC
GTCGATCGTGGTCAACGATGCGCTCTGGGGGCTGATTTCCTGCCACCACTACAGCCCGCACTTCACCAGCCATGCCATGC
GCGATGCCACCGATGCGGTTACCCGCGCGCTGGCCGGGCGCATCGGCGCGCTGCAGGCGGTGGGGCGGGCGCGGTTGGAG
TCGGTGTTGCTCACCATCCGCGAAAAACTGATCACCGACTTCAACGATGCCGAGCACCTGACCGTGGACATGCTCGCCGA
CATGGCCCCGGACCTGATGGACGTGGTCGACGCCGACGGCGTGGCAATCTTCCATGGCAACGAGATCAGCCGTCATGGCA
GCGTGCCGGATGCCGATGCGCTGCGTCGCATCCGCGACCACATCGAATCCGAACACCACGACGCCCTGCGCGCGGACGCA
GTCGGCGCGCTGCACGTGGATGCCATCGGCGAGGTATTTCCGGAGCTGGCCGATCTCGCGCCGCTGGCCGCCGGCTTCAT
CTTCGTGCCGCTGATGCCGCAATCGCGCAGCGCCCTGTTGTGGACCCGCCGCGAGCAGGTGCAGCAGGTGAAATGGGCCG
GCAACCCGCAGCTGGCCAAGCTGCAGGACATCCCCAACTCGCGGCTGTCGCCGCGCAAGAGTTTCGATCTGTGGCAGCAG
ACCGTGCGCGGACGCGCGCGACGCTGGTCGCCGCTGCATCTGGAATCGGCACGCAGCCTGCGCGTGCTGATCGAACTGAT
GGAACGCAAGCGCTTCCAACAGGATTTCTCCCTGCTCGAAGCCTCGCTGTCGCGGTTGCGCGACGGAGTGGCCATCATCG
AACGCGGCGCCAACGCCGCTGCGCACCGGCTGATGTTCGTCAACCCGGCGTTCGCCGACCTCAGTCAGACCGAGGTGGCC
GACTTGATCGGCTGCGACATCCTCGCCTTGCTGGCCGACGATGCTGAGCGGGGCAAGGTCGAACTGCTGGAAGAAGCGCT
GCGCCTGGGCCGCGCCGCCTACGTCACCCTGCCACTGCGCACCCAGGGTGGCGAGCCGGCATATCGCCAATTCCATCTCG
AACCCTTGCCCAGCTCCAGCGGCGTGACCGCGCACTGGCTGCTGCAATTACGCGATCCGGAATAA

Upstream 100 bases:

>100_bases
ATCGACGCCTCGACACCGCATCCGCGCGCGCCGCCGCCATCGATGGCGCGCAGACCATGTTTGCCCACTTCCATACCTGC
CTCGCAGCGGAGCCGCACCT

Downstream 100 bases:

>100_bases
AAGCAGCCGATAAAACGACTTCGCTCATCCCCAGGCGGGCGCCGGTGCTCGAAATCGACGTGTACCACTTGTATCTGCCG
CTCATTTCAGCGCATCAGCG

Product: phytochrome-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 634

Protein sequence:

>634_residues
MNQPTEPLDMDVCAREPIHIPGLIQPYGVLLVIEPADGRIVQASSTAAELLGVPMDALLGMAYTQVLEMPDAQPGAVDDQ
PQHVLHADVRFPQRSAPTDHPWVAAWHLYPEQWLIEIEPRDARLMDVTLREALPLLRSIERDAGIEEASVRAAKGLRSMI
GFDRVMVYRFDEEWNGDVIAEARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL
SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAVTRALAGRIGALQAVGRARLE
SVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADGVAIFHGNEISRHGSVPDADALRRIRDHIESEHHDALRADA
VGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ
TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFSLLEASLSRLRDGVAIIERGANAAAHRLMFVNPAFADLSQTEVA
DLIGCDILALLADDAERGKVELLEEALRLGRAAYVTLPLRTQGGEPAYRQFHLEPLPSSSGVTAHWLLQLRDPE

Sequences:

>Translated_634_residues
MNQPTEPLDMDVCAREPIHIPGLIQPYGVLLVIEPADGRIVQASSTAAELLGVPMDALLGMAYTQVLEMPDAQPGAVDDQ
PQHVLHADVRFPQRSAPTDHPWVAAWHLYPEQWLIEIEPRDARLMDVTLREALPLLRSIERDAGIEEASVRAAKGLRSMI
GFDRVMVYRFDEEWNGDVIAEARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL
SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAVTRALAGRIGALQAVGRARLE
SVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADGVAIFHGNEISRHGSVPDADALRRIRDHIESEHHDALRADA
VGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ
TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFSLLEASLSRLRDGVAIIERGANAAAHRLMFVNPAFADLSQTEVA
DLIGCDILALLADDAERGKVELLEEALRLGRAAYVTLPLRTQGGEPAYRQFHLEPLPSSSGVTAHWLLQLRDPE
>Mature_634_residues
MNQPTEPLDMDVCAREPIHIPGLIQPYGVLLVIEPADGRIVQASSTAAELLGVPMDALLGMAYTQVLEMPDAQPGAVDDQ
PQHVLHADVRFPQRSAPTDHPWVAAWHLYPEQWLIEIEPRDARLMDVTLREALPLLRSIERDAGIEEASVRAAKGLRSMI
GFDRVMVYRFDEEWNGDVIAEARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL
SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAVTRALAGRIGALQAVGRARLE
SVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADGVAIFHGNEISRHGSVPDADALRRIRDHIESEHHDALRADA
VGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ
TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFSLLEASLSRLRDGVAIIERGANAAAHRLMFVNPAFADLSQTEVA
DLIGCDILALLADDAERGKVELLEEALRLGRAAYVTLPLRTQGGEPAYRQFHLEPLPSSSGVTAHWLLQLRDPE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 70469; Mature: 70469

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPTEPLDMDVCAREPIHIPGLIQPYGVLLVIEPADGRIVQASSTAAELLGVPMDALLG
CCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCHHHHHHCCCHHHHHH
MAYTQVLEMPDAQPGAVDDQPQHVLHADVRFPQRSAPTDHPWVAAWHLYPEQWLIEIEPR
HHHHHHHHCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCC
DARLMDVTLREALPLLRSIERDAGIEEASVRAAKGLRSMIGFDRVMVYRFDEEWNGDVIA
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEE
EARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL
CCCCCCHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAV
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TRALAGRIGALQAVGRARLESVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCC
VAIFHGNEISRHGSVPDADALRRIRDHIESEHHDALRADAVGALHVDAIGEVFPELADLA
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHH
PLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ
HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHH
TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFSLLEASLSRLRDGVAIIERGANAA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHH
AHRLMFVNPAFADLSQTEVADLIGCDILALLADDAERGKVELLEEALRLGRAAYVTLPLR
HCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEEE
TQGGEPAYRQFHLEPLPSSSGVTAHWLLQLRDPE
CCCCCCHHHEEECCCCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MNQPTEPLDMDVCAREPIHIPGLIQPYGVLLVIEPADGRIVQASSTAAELLGVPMDALLG
CCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCHHHHHHCCCHHHHHH
MAYTQVLEMPDAQPGAVDDQPQHVLHADVRFPQRSAPTDHPWVAAWHLYPEQWLIEIEPR
HHHHHHHHCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCC
DARLMDVTLREALPLLRSIERDAGIEEASVRAAKGLRSMIGFDRVMVYRFDEEWNGDVIA
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEE
EARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL
CCCCCCHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAV
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TRALAGRIGALQAVGRARLESVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCC
VAIFHGNEISRHGSVPDADALRRIRDHIESEHHDALRADAVGALHVDAIGEVFPELADLA
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHH
PLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ
HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHH
TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFSLLEASLSRLRDGVAIIERGANAA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHH
AHRLMFVNPAFADLSQTEVADLIGCDILALLADDAERGKVELLEEALRLGRAAYVTLPLR
HCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEEE
TQGGEPAYRQFHLEPLPSSSGVTAHWLLQLRDPE
CCCCCCHHHEEECCCCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]