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The map label for this gene is bkdR [H]

Identifier: 84621901

GI number: 84621901

Start: 268548

End: 269030

Strand: Direct

Name: bkdR [H]

Synonym: XOO_0244

Alternate gene names: 84621901

Gene position: 268548-269030 (Clockwise)

Preceding gene: 84621898

Following gene: 84621902

Centisome position: 5.44

GC content: 64.8

Gene sequence:

>483_bases
ATGGATCATCCCATTGCTCTGGACCGCACCGATTTGCGCTTGCTCGCCTTGCTGCAGGCTCAGGGGCGCACGAGCAATGC
CGAGCTGGCGGTGCAGGTCAATCTGTCGGCGTCTGCGTGCCTGCGGCGCACCCAGCGGCTGGAGGCTGCCGGCATCATCG
CCGGCTATGGCGCGCGCCTGGATGCGCGCGCGCTGGGGCTCGGCTTGCAGGCTTTTGTACGCGTGCAGTTGGAGCAGCAC
GGCCAGGCCGATATCGAACACTTCGCCCAAGGCGTGCGCGGCTGGGACGAGGTCGTGGCGTGCTGGGCGCTCACCGGCGA
CATGGATTATCTGCTGCAGGTGCAGGTACGCGACCTCGAACACTTCTCGCGGTTTCTGCTCGATCGCCTGCTCAATGCCA
CGGGCGTGTCGGATGTGAATTCCAGCTTCGTGTTGCGCATGGTGAAAGCGCCGGAAGGTCTGCCGCTGTCGCATCTGGCA
TAA

Upstream 100 bases:

>100_bases
TCACCTTAGCCGGATGGCCGCGCAACGGGATTGCAAATCTTGCGTGTTTCGACTGCAACGGCGCAAGATTCGTGCGTCAT
CATTTGCTAGTGCGCAACAT

Downstream 100 bases:

>100_bases
GCGAACCGAAGGGCCGGATGCGCGTTGCCTGGCGCGGAGGACGCAACGCTGCAGGCAGCACCAACCTGCGCCGCAGCTTC
GGCGCGCATGCAAGAACGTC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MDHPIALDRTDLRLLALLQAQGRTSNAELAVQVNLSASACLRRTQRLEAAGIIAGYGARLDARALGLGLQAFVRVQLEQH
GQADIEHFAQGVRGWDEVVACWALTGDMDYLLQVQVRDLEHFSRFLLDRLLNATGVSDVNSSFVLRMVKAPEGLPLSHLA

Sequences:

>Translated_160_residues
MDHPIALDRTDLRLLALLQAQGRTSNAELAVQVNLSASACLRRTQRLEAAGIIAGYGARLDARALGLGLQAFVRVQLEQH
GQADIEHFAQGVRGWDEVVACWALTGDMDYLLQVQVRDLEHFSRFLLDRLLNATGVSDVNSSFVLRMVKAPEGLPLSHLA
>Mature_160_residues
MDHPIALDRTDLRLLALLQAQGRTSNAELAVQVNLSASACLRRTQRLEAAGIIAGYGARLDARALGLGLQAFVRVQLEQH
GQADIEHFAQGVRGWDEVVACWALTGDMDYLLQVQVRDLEHFSRFLLDRLLNATGVSDVNSSFVLRMVKAPEGLPLSHLA

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=40.3973509933775, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=38.4615384615385, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17556; Mature: 17556

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHPIALDRTDLRLLALLQAQGRTSNAELAVQVNLSASACLRRTQRLEAAGIIAGYGARL
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHEEECCCCCC
DARALGLGLQAFVRVQLEQHGQADIEHFAQGVRGWDEVVACWALTGDMDYLLQVQVRDLE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
HFSRFLLDRLLNATGVSDVNSSFVLRMVKAPEGLPLSHLA
HHHHHHHHHHHHHCCCCCCCHHHHHHEECCCCCCCHHCCC
>Mature Secondary Structure
MDHPIALDRTDLRLLALLQAQGRTSNAELAVQVNLSASACLRRTQRLEAAGIIAGYGARL
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHEEECCCCCC
DARALGLGLQAFVRVQLEQHGQADIEHFAQGVRGWDEVVACWALTGDMDYLLQVQVRDLE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
HFSRFLLDRLLNATGVSDVNSSFVLRMVKAPEGLPLSHLA
HHHHHHHHHHHHHCCCCCCCHHHHHHEECCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]