| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84621794
Identifier: 84621794
GI number: 84621794
Start: 139397
End: 140554
Strand: Direct
Name: 84621794
Synonym: XOO_0137
Alternate gene names: NA
Gene position: 139397-140554 (Clockwise)
Preceding gene: 84621793
Following gene: 84621795
Centisome position: 2.82
GC content: 61.14
Gene sequence:
>1158_bases ATGAAATACTTCTCGCTCGTATGGGCGCAGCTGTTCCGCAGCGAGACGCGGACGCTGCTGACCCTGCTGTCGGTGGTCGC TGCATTCCTGTTGTTCGGCATGCTCGATTCGGTGCGTGTGGCGTTCAATTCCGGCGGCAGCATCGAAGGCGTCAACCGCC TGGTGGTGACCTCGCGCCTGTCGATCACCCAGTCGCTGCCGATCCGCCTGGGTACGCAGATACGCGAGGTGGCCGGGGTG CGCGATGTGACCTCGGCGATATGGTTCGGTGGCATCTATAAAGATCCGAAGAACTTCTTCGCCAACTCCTCGGTGGCTCC GAACTACTTCGACGTCTACCGTGAACTGCAGATTCCTCCAGAACAGCTGAAGGCGTTCCATACCACACGCGCCGGCGCGA TCGTTGGCGAATCGCTGGCCAAAGAGTTCGGCTGGAAGCTCGGCGACACCATCCCACTGCAGGCGACGCTCTTCCCACGC GGCGGCAGCAATAACTGGCCGCTGGAACTGGTCGGCATCTTCCGCTCCAAGGACCGCACGCTGGCCGCCAACGAGGAACG CCAGCTGATGATGAATTGGAAGTACTTTGATGAATCCAATGACTACATCAAAAACAAGGTCAGCTGGTACACGGTGACGC TGGACAACCCCGACCATGCCTCGCGCGTTGCGCAGGCGATCGATGCGATCTCGGCCAACTCCGATCACGAAACCAAGAGC CAGACCGAATCGGCATTTCAACAGGCCTTCGTTAAGCAGTTCGCCGACATCGGCATGATCGTCACCTCGATCATGGGCGC GGTGTTCTTCACACTGCTGCTGTTGACCGGCAACACCATGGCCCAGGCGGTACGCGAGCGCATCCCGGAACTGGCGACGC TGAAGACGCTCGGCTTCAAGGACGGCACGCTGCTGACTCTGGTGATGGTCGAATCGGTGCTACTGATTGGGCTCGGTGGT GCGACCGGACTGGGTCTTGCGGCGTTGATCCTGCCGGGGCTGGCGTCAAAGGCAATGGGCATGCTGCCTCCGAACGTGCC ACTTCAAACCTGGCTGGTCGGTGCCGGGCTGATCGTGGTGATCGGCGTGGTAGTCGGCGTGCTGCCGGCGCTACGCGCGA AGCGTCTGAAGATCGTCGATGCCCTGGCTGGGCGCTGA
Upstream 100 bases:
>100_bases CACCCACGATCCCAAGGCCGCCGAGTACGCCTCGCATACCGTGCATCTGGACAAGGGCGAGCTGGCCGACGCACTGGTCG CTGACTAACCGGAGACGACG
Downstream 100 bases:
>100_bases GAGGAGATCGACATGAAGAAGCATTGGTTGGGCAACGCGCTGTCGATCCTGCTGATGGTGGTGGGCCTGGGCGTGTGGAT CGCGCTGCCATGGATCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transport System Permease Protein; ABC Efflux Pump Inner Membrane Subunit; ABC Transporter Permease Protein; ABC Transporter Membrane Protein; Permease MacB Permease Domain; Transmembrane Permease; Membrane Transporter Protein; Transmembrane Protein
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MKYFSLVWAQLFRSETRTLLTLLSVVAAFLLFGMLDSVRVAFNSGGSIEGVNRLVVTSRLSITQSLPIRLGTQIREVAGV RDVTSAIWFGGIYKDPKNFFANSSVAPNYFDVYRELQIPPEQLKAFHTTRAGAIVGESLAKEFGWKLGDTIPLQATLFPR GGSNNWPLELVGIFRSKDRTLAANEERQLMMNWKYFDESNDYIKNKVSWYTVTLDNPDHASRVAQAIDAISANSDHETKS QTESAFQQAFVKQFADIGMIVTSIMGAVFFTLLLLTGNTMAQAVRERIPELATLKTLGFKDGTLLTLVMVESVLLIGLGG ATGLGLAALILPGLASKAMGMLPPNVPLQTWLVGAGLIVVIGVVVGVLPALRAKRLKIVDALAGR
Sequences:
>Translated_385_residues MKYFSLVWAQLFRSETRTLLTLLSVVAAFLLFGMLDSVRVAFNSGGSIEGVNRLVVTSRLSITQSLPIRLGTQIREVAGV RDVTSAIWFGGIYKDPKNFFANSSVAPNYFDVYRELQIPPEQLKAFHTTRAGAIVGESLAKEFGWKLGDTIPLQATLFPR GGSNNWPLELVGIFRSKDRTLAANEERQLMMNWKYFDESNDYIKNKVSWYTVTLDNPDHASRVAQAIDAISANSDHETKS QTESAFQQAFVKQFADIGMIVTSIMGAVFFTLLLLTGNTMAQAVRERIPELATLKTLGFKDGTLLTLVMVESVLLIGLGG ATGLGLAALILPGLASKAMGMLPPNVPLQTWLVGAGLIVVIGVVVGVLPALRAKRLKIVDALAGR >Mature_385_residues MKYFSLVWAQLFRSETRTLLTLLSVVAAFLLFGMLDSVRVAFNSGGSIEGVNRLVVTSRLSITQSLPIRLGTQIREVAGV RDVTSAIWFGGIYKDPKNFFANSSVAPNYFDVYRELQIPPEQLKAFHTTRAGAIVGESLAKEFGWKLGDTIPLQATLFPR GGSNNWPLELVGIFRSKDRTLAANEERQLMMNWKYFDESNDYIKNKVSWYTVTLDNPDHASRVAQAIDAISANSDHETKS QTESAFQQAFVKQFADIGMIVTSIMGAVFFTLLLLTGNTMAQAVRERIPELATLKTLGFKDGTLLTLVMVESVLLIGLGG ATGLGLAALILPGLASKAMGMLPPNVPLQTWLVGAGLIVVIGVVVGVLPALRAKRLKIVDALAGR
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41967; Mature: 41967
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYFSLVWAQLFRSETRTLLTLLSVVAAFLLFGMLDSVRVAFNSGGSIEGVNRLVVTSRL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH SITQSLPIRLGTQIREVAGVRDVTSAIWFGGIYKDPKNFFANSSVAPNYFDVYRELQIPP HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCH EQLKAFHTTRAGAIVGESLAKEFGWKLGDTIPLQATLFPRGGSNNWPLELVGIFRSKDRT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHHCCCCC LAANEERQLMMNWKYFDESNDYIKNKVSWYTVTLDNPDHASRVAQAIDAISANSDHETKS CCCCCCHHEEEEEEEECCCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHH QTESAFQQAFVKQFADIGMIVTSIMGAVFFTLLLLTGNTMAQAVRERIPELATLKTLGFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCC DGTLLTLVMVESVLLIGLGGATGLGLAALILPGLASKAMGMLPPNVPLQTWLVGAGLIVV CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH IGVVVGVLPALRAKRLKIVDALAGR HHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKYFSLVWAQLFRSETRTLLTLLSVVAAFLLFGMLDSVRVAFNSGGSIEGVNRLVVTSRL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH SITQSLPIRLGTQIREVAGVRDVTSAIWFGGIYKDPKNFFANSSVAPNYFDVYRELQIPP HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCH EQLKAFHTTRAGAIVGESLAKEFGWKLGDTIPLQATLFPRGGSNNWPLELVGIFRSKDRT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHHCCCCC LAANEERQLMMNWKYFDESNDYIKNKVSWYTVTLDNPDHASRVAQAIDAISANSDHETKS CCCCCCHHEEEEEEEECCCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHH QTESAFQQAFVKQFADIGMIVTSIMGAVFFTLLLLTGNTMAQAVRERIPELATLKTLGFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCC DGTLLTLVMVESVLLIGLGGATGLGLAALILPGLASKAMGMLPPNVPLQTWLVGAGLIVV CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH IGVVVGVLPALRAKRLKIVDALAGR HHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA